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Detailed information on CNT30371352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 8e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597159Oryza glumipatulaOryza meridionalis42.7652.2193.12378forward
CNT30104256Oryza glumipatulaOryza rufipogon67.1945.6996.3594forward
CNT30578324Oryza glumipatulaOryza barthii67.5360.7996.48597forward
CNT30117950Oryza glumipatulaOryza nivara67.1971.6597.98594forward
CNT30593783Oryza glumipatulaEragrostis curvula21.8336.5590.67193forward

Expression of CNT30371352

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGAARGRPSRPRSPGRRRTA*

>peptide 2 (77 aa)
IRYPKEVSRQLKVTQLFSSIKKISMPLTLRQTTNLDTKDATKKVHINNTGHSSERYKQTRHNRKANVVLKADTQTDR*

>peptide 3 (41 aa)
MRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30371352
TAATCAGATATCCAAAAGAAGTTTCACGCCAATTAAAGGTCACACAATTATTCTCTAGCATAAAAAAGATTTCAATGCCATTGACTTTAAGACAAACGAC
GAACTTGGATACTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGGTACAAGCAAACCCGGCATAATCGAAAAGCAAAT
GTTGTTTTAAAAGCAGACACACAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAG
AACCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGCTTGGA
GTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCT
CCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGG
CCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGAGCTGCTCGTGGTAGGCCTTC
TCGGCCGAGATCACCGGGGCGTAGGAGGACAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCAC
CATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAGCACATTAGCATTAGCCACATGATGTCAAGACAAATTGCACA