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Detailed information on CNT30371334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696990Oryza glumipatulaOryza sativa44.6343.7100378forward
CNT30676219Oryza glumipatulaSetaria viridis17.1259.6795.86145forward
CNT30377016Oryza glumipatulaArabidopsis thaliana9.822.884.3483forward
CNT3068331Oryza glumipatulaLeersia perrieri19.1321.1298.77162forward
CNT30597047Oryza glumipatulaOryza meridionalis33.8829.5398.26287forward
CNT30570222Oryza glumipatulaVitis vinifera12.2820.8482.69104forward
CNT30104230Oryza glumipatulaOryza rufipogon36.4812.5599.68309forward
CNT30578122Oryza glumipatulaOryza barthii44.6347.97100378forward
CNT30117905Oryza glumipatulaOryza nivara44.6332.73100378forward

Expression of CNT30371334

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MPSLASAASPSLVYLPSCASELALARRSSAFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 2 (72 aa)
KGVTRIIPETQACIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 3 (43 aa)
MYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

>peptide 4 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

Sequence

>CNT30371334
TAAGGGGGTAACCAGAATAATTCCAGAAACACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTA
TACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAAC
CACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCC
TCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCT
TGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGTT
CTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTATTCTTGA
TCATCTACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGATCAACA
TTTCCAGTCAGGTTAAGCCATTTTGCAAGAAGTAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCAT
GATGCCGGGGACGGCAGGGGGGATCCTTCTGTGGAGGAGCTTGAGGG