Detailed information on CNT30371327


BLAST search results

BLAST vs Swiss-Prot:
sp|F7J0M4|RGA4R_ORYSJ, E-value = 5e-160

BLAST vs NONCODE:
NONORUT001572, E-value = 6e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697109Oryza glumipatulaOryza sativa40.8498.6599.751607forward
CNT30555298Oryza glumipatulaOryza glaberrima16.6210099.85654forward
CNT30597053Oryza glumipatulaOryza meridionalis73.5782.2999.072895forward
CNT30104184Oryza glumipatulaOryza rufipogon59.6491.2999.872347forward
CNT30604314Oryza glumipatulaOryza punctata1.6524.0796.9265forward

Expression of CNT30371327

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MATGENTKIEQAGLDNMARKAGIVVNKYMLHSF*

>peptide 2 (37 aa)
MVLHCFLPLLFCFFANSFVKSNLLEAFGADVLDVDAT*

>peptide 3 (39 aa)
MQLVHSVARYEQIIMLKQKCSQICNQLQILVYLYTTLLL*

>peptide 4 (41 aa)
MEWMAVVTSTMLLDPVSTGKASFIVLFQYSLWMSSITMKNL*

>peptide 5 (44 aa)
MCQAWQLDDLYGQNFYLCSSYIECLQKFQFCDLLWEHCNSAPKA*

>peptide 6 (50 aa)
MTGCNLPPDKDELRIIMDDSSVMSGNLPLDKDKSSDVCCHPLRKKGSFVV*

>peptide 7 (52 aa)
MEVICLFCLLASESLSSRNLPGKTSAYSLGLGSTPQNSEKASGHRSYWCPSG*

>peptide 8 (55 aa)
MDRLPECTFVTMKRWVATDTLRQEHELSRVFFPFTISFGHSGNFPSCGSDFFIPV*

>peptide 9 (56 aa)
MQDELKHHAVSLACLHLSVTARSNRLNDAPVDQLVEVVRSNIQRTSERVCLNKPFS*

>peptide 10 (68 aa)
MTCMGRTFIFVLRTSSVSKNFSFVISFGSIVTVPPRLKYLSSNSLHIFLRCSSFKFSHSSRSKTLSSS*

>peptide 11 (67 aa)
MNFPVCFSHLPLVLGTRETFHLVVVIFSFLCNLQQHHIIILKRWYLPYVKMQTNALVVMLSLVIMTT*

>peptide 12 (65 aa)
MYWMLMPHSPFRSLQSSRNDSRFGRAPCWISGSVMVCTMMHKRRRLLSGPCPMTNFSRLGVISLR*

Sequence

>CNT30371327
TTGAGATTGTTTACATCCCTGAATATGCTCTATAAGTGATGTGATCTATTTCTAAAATATTTTTTGATTTTTCAAATCACCTTGGATGGAGACATGCCCT
ACGCTGAAGTTGTAGAACTCGATGAGATTTGCAACTTTGTAGTTGAAAGCGTTCTCATTTGAAGTCATCTAGAGTTTCAAATTTTTGTTTCATATTTGGA
CAAAATAATCAAAAGAATAATTAATATCTGAAGACTCATCAAGATGTGGTCTATAAATGAGATGGTACAATTAGTTTGCATGTGCTGAGAGGTCCTAGGT
TCGAATCCAACTGTGGCGTGCATGTAAATGTCACTTGAAAAATCATGAATTTCTAGCTAGTGTTGTGTGACCATAGATGGAATGTCCTAGAGTGAAAGGG
CATGTGGCCTAGTGGTTACAGTGACTTGAATAGCACCCCAAGGTCCTGAGTTCAAATCTCCATAGGAGCGAATTTCAGATTGGGTTATTTGAGGGCTAAG
TTCCCTGTTTGATAGGCTAACTTACTAATTTAAAAAGGCTACATATATCCGGTTGGATGTAGAGGCCGGGTAAAAAAATACCCTTCTCTAAAATAAATAA
ATAAATAAATAGATAATGGAATGTCCTAGTAATATATAGAATATTTTTAGCGTTTTTTGTGCATTAAAATTCAAAAATCGTAAATTCTCATGTGTGAATG
TTCGTAATTATGAATCGTCACGGATGACGGGTTGTAACTTACCACCCGACAAAGATGAGCTACGAATCATCATGGATGACTCATCCGTGATGAGTGGTAA
CTTACCACTCGACAAAGATAAGTCATCGGATGTATGTTGCCACCCGTTACGAAAGAAGGGTTCTTTTGTAGTGTAGGTTACTAGTAATCCCTTATCATCT
ATCCCTCCTAGCTCATAACCGTGGGGTTGCGGGTTCGATTTCCACTACCCGCTGCATATTCCTTCTTTATGATATATGCATCATACATTTGTATATGTAA
CATATTCGTAAGGGCAAAGGCTCGTGGAAATCAATAATCACAATTGTCCTCCCTAGTAGGGTTTCACTCTTTATAGAAACAATTTTAACAACCGCTAGGA
AATCGACAAATTTATGGATCAATACTGTCATTTGAATATGTAATTGTGATAACACTGAAATACACATGCTTGCTCTACTGATTATAATATGCAGCTAGTG
CACAGTGTAGCAAGATATGAGCAGATAATAATGTTGAAACAGAAGTGCAGTCAAATTTGTAATCAACTACAGATTCTTGTATATCTGTACACCACTCTTT
TGCTGTAACTTGGAAAGAGTGGTGTCACCATGATGCAGCTTGTGGTGAAGAGCGAGATAGAAAGAGAGTAACTGATGACGACAGTGAGCAGAGCCAGCCC
AGAGGATGTTCTCGCTATCTAGCAGAAATGGTGACATTCATCATTCACAGGGTTCAGCTTGCCTGGTGAAGTCCCATTAGTTTTGAAGTATGGCTCAGTA
TTGCTGCAAGATTCCCTAGAGGTTTGGCCCATGGAACAGAGATCTAAGGTCCTTTCTTGATCTGCCTTTGGACGTCTAAAAACCGGAACCGGCCTTAGGG
AGCCGGCAGCCAAAGCCAGTGCTGCAGCATCCTCTGTAGGCTGAGCAACCTCCATATTCTGCATCTGACCAACCTCTCCTGTATTAACAAATGAGACCTT
GGGCCGTCTAGGATGGTTCTTCACTGTTTCCTTCCACTTCTTTTTTGTTTCTTCGCTAATTCTTTTGTCAAGAGCAACCTCCTTGAGGCATTCGGGGCCG
ATGTACTGGATGTTGATGCCACATAGCCCATTTAGATCCTTACAGAGCAGCCGGAATGACTCCAGATTTGGCAGAGCCCCCTGTTGGATTTCTGGCTCGG
TCATGGTTTGCACCATGATGCACAAGCGTCGTAGGCTTTTGAGTGGACCCTGTCCTATGACAAACTTTTCCAGATTAGGTGTAATCAGTTTGAGGTAATG
CAAACAGCGAACATTGCTTAGGGCAGCAAGAACATCCCTGTTGAGCTTATCAGAGGATGATAGACACAGCTCAGTAAGACCTTTCAGCAAGGTTACAAAT
GGAGGTAATATGTTTATTTTGCCTTTTAGCTTCAGAGAGCTTAAGTAGCAGGAATCTTCCAGGGAAAACTTCAGCATATTCTCTTGGTCTTGGAAGCACC
CCCCAAAATTCAGAGAAAGCGAGCGGACATCGTTCATATTGGTGCCCCTCTGGATGAAAACTTGAATGGCCTTTGAAAGGTGAACAGTGTTGCTGCTAGA
ATTGGAAGGGGTCTCGCTCTCGCACCATATTTTAACCTTGGCCAAGTTTTTCATATGATCAATGAGTTGAGGAAATCCTTGGTCATTATTGGCAAAAAAT
CCCGCTAGTGTCTCCAGCTTACTTTTCTCAGACAGATACTTCTGTAGCTTGCTAATTTTCTGGCCTACATCTTGAAGTTTGAAATTTCCAAATAGATGTG
TCAAGCATGGCAGCTTGATGACTTGTATGGGCAGAACTTTTATCTTTGTTCTTCGTACATCGAGTGTCTCCAAAAATTTCAGTTTTGTGATCTCCTTTGG
GAGCATTGTAACAGTGCCCCCAAGGCTTAAATACCTGAGCAGCAACAGCTTGCATATCTTCCTGAGATGTTCATCTTTCAAATTTTCACATTCTTCAAGA
TCCAAAACTCTCAGTAGTTCATAACTGGAGAATTCTAAAACAGAGTCTTCTGCCTCTCCGAAGATTGTCAAAGACCGAACATGAGATAAATCAATGTCTG
AGTTCATTCTGCCCCTTCTGGTGCTGTTATGTTGCACAGTAAGGCAACGTATTTTGTCAGGCAGGCAAGCTTGATCATATAGCAACGTAATGAAGTCATC
GCACATGGACTTATGCAGGATGAACTCAAGCATCATGCCGTGAGTTTGGCATGTCTTCACCTCAGTGTTACTGCTCGTAGCAACAGGCTGAATGATGCTC
CGGTTGATCAGCTCGTTGAAGTAGTCCGTAGCAACATCCAGAGAACTTCGGAGAGGGTCTGCCTCAACAAGCCCTTCAGCTGACCATCGCCTTATCAGTT
TTCCTCTCCTGACCGGATGGCCACTGGGGAAAATACCAAAATAGAGCAAGCAGGCCTTGATAACATGGCCAGGAAGGCTGGTATAGTTGTGAACAAGTAC
ATGCTTCATTCTTTCTAAAGTATCCTCTCTTTCCAGATGCATACCCAGATTGCCACACAACTTTGCATATTCTTGTGGTAGCTGTTGACCTTTACTTTTC
AAGAATTGGGCTGTTGATACAAGGGCAAGTGGTAAACCATCACATTTAGTACTCAGCACTGTTTCTGAACCAGAGCTGCAGGCATTTGCTATGGAATGGA
TGGCCGTCGTCACCAGCACTATGCTGCTTGATCCTGTATCTACAGGGAAAGCATCTTTTATAGTACTGTTCCAATATTCCCTCTGGATGTCATCAATTAC
AATGAAGAACCTATAGAGATGTATTGAGAAATAAGGATGGGAAAGTTTCCTGAACATTGCGGAGTATTTTAGAAACCAAGGAGACGTTTCCGGTGCAGAA
TGCTATACACGGGATGGATAGACTTCCCGAGTGTACATTTGTGACAATGAAAAGATGGGTGGCAACGGACACACTTCGGCAGGAACATGAACTTTCCCGT
GTGTTTTTCCCATTTACCATTAGTTTTGGGCACTCGGGAAACTTTCCATCTTGTGGTAGTGATTTTTTCATTCCTGTGTAATTTGCAGCAGCATCATATT
ATCATATTGAAGAGGTGGTATTTGCCCTATGTTAAAATGCAGACAAACGCTTTGGTAGTAATGTTGAGTCTTGTTATAATGACAACATGAGAAGAAAGTG
AGCACGTGGATTTTTTGATTATATAGTTAATGGTA