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Detailed information on CNT30371307


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697144Oryza glumipatulaOryza sativa75.81101.1197.2821forward
CNT30677012Oryza glumipatulaSetaria viridis23.6436.3183.98256forward
CNT30524410Oryza glumipatulaSetaria italica23.6432.7483.98256forward
CNT30295002Oryza glumipatulaTriticum aestivum22.3546.986.36242forward
CNT30438779Oryza glumipatulaAegilops tauschii15.626.7892.9169forward
CNT30664041Oryza glumipatulaTriticum dicoccoides15.645.0795.86169forward
CNT30465769Oryza glumipatulaSaccharum spontaneum23.364483253forward
CNT30135675Oryza glumipatulaLolium perenne15.644.5990.53169forward
CNT30365046Oryza glumipatulaSorghum bicolor23.3626.2783.79253forward
CNT30597113Oryza glumipatulaOryza meridionalis41.3759.7397.54448forward
CNT30481599Oryza glumipatulaChara braunii9.2322.5287100forward
CNT30322408Oryza glumipatulaAsparagus officinalis18.9323.5983.9205forward
CNT30578121Oryza glumipatulaOryza barthii75.8110099.15821forward
CNT30498372Oryza glumipatulaDigitaria exilis19.6744.8484.04213forward

Expression of CNT30371307

Peptides detected in this lncRNA

>peptide 1 (70 aa)
DENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 2 (48 aa)
MKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

>peptide 3 (68 aa)
MKNPSMENMASRPFLISFTFSSAAWSGSLASPSGSNGPPGWSLSSRSCTTIAIAGESPVSISEQNQQV*

Sequence

>CNT30371307
TGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAG
GTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGAT
TAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGC
CGAAGGGGTTCTCGACGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCAC
CTTCAGCAGCGCCGCCTGGTCCGGGTCGCTCGCCAGCCCCAGCGGGTCGAATGGGCCACCTGGGTGGAGCTTGTCCTCCAGATCCTGCACCACCATCGCC
ATCGCCGGCGAATCTCCGGTGAGTATCAGCGAGCAAAATCAACAAGTGTAGACTAACTAAGGTCCCGTGTTTGAGTTCATCGAAGATAAATTAAGGGTAC
TTCAAATGAGAAAGCTATTAGCGTTTGATTAATTGAGTTCTAATTACTTTAAGTTTGAAAGAGGATTTAAAATTTTTATATAAAAAGTTCTCGTATGAAA
TACACCATTCAACAAATTGGAAAGCGTGCTACCGGAAAAAAAAAATGTAAGACTAATTAAGTTTTAATTATTTTAGATTTGGAAAAGGATCTATCTGATA
TTTTAAAGCAATTTTCATATACAAAGTTTTCGTACGAGATATAGCATTTAACAAATTGGAAAGCATGCTACCGGAAACCAAAAGGTGTAAGACTAGGGCG
TGTAGATTGTGCAGTTGACTGACCAGGCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCGGCGGCGACGGCGACGATGAGGTTGA
TGGGGATGCTGTTGCCGAAGTAGTTGAGGGAGCTGGCGAAGTTGAGCCGGGTGCCGAGCATCTTGGACGGGGCGAGCGCCGCC