« Back to Oryza glumipatula search


Detailed information on CNT30371297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068273Oryza glumipatulaLeersia perrieri87.2540.7482.79308reverse complement
CNT30105029Oryza glumipatulaOryza longistaminata81.8762.6995.5289reverse complement
CNT30104659Oryza glumipatulaOryza rufipogon87.2563.6483.77308reverse complement
CNT30578572Oryza glumipatulaOryza barthii87.2565.8184.09308reverse complement
CNT30118011Oryza glumipatulaOryza nivara87.2577.7884.09308reverse complement
CNT30604793Oryza glumipatulaOryza punctata83.5763.7189.83295reverse complement

Expression of CNT30371297

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MFTEGASCVQIVQVSPSKFLHRPYRLGTLIKEYNYCCCYVFATAEERGNLIYQDGYISHWVL*

>peptide 2 (32 aa)
MFLPLLRKEATSFIKTVISHIGYYELCDQQLY*

>peptide 3 (30 aa)
MRKTECSLRVLPVFKLFRFLQVNFCIGHIG*

Sequence

>CNT30371297
AACATCAGGTGGAATAATGGATGCGAAAGACTGAATGTTCACTGAGGGTGCTTCCTGTGTTCAAATTGTTCAGGTTTCTCCAAGTAAATTTCTGCATAGG
CCATATAGGTTAGGTACATTGATAAAAGAATACAACTACTGCTGCTGCTATGTTTTTGCCACTGCTGAGGAAAGAGGCAACCTCATTTATCAAGACGGTT
ATATCTCACATTGGGTATTATGAGTTATGTGATCAACAGTTGTACTGAAACAAGTGCTAGTATTGTCTTAAGTGAAAATATAAGAGGTTAACATGTTGGT
TTCCCCAGATACTATTTTTTGTACCTGCTCGTGCACAATTTATACAATCGGTC