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Detailed information on CNT30371283


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001702, E-value = 7e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30469647Oryza glumipatulaSaccharum spontaneum16.4243.595.487forward
CNT30103826Oryza glumipatulaOryza rufipogon58.6845.0199.36311forward

Expression of CNT30371283

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAERSGGSRWASGRASWRAGSRRRACRRRRWCRRRGG*

>peptide 2 (32 aa)
MTCGVRRPAGGDHGGALRRLTLGLRPSILASW*

>peptide 3 (29 aa)
MTHSKQSNNFFFTFYPYQHTAKGNNFLIR*

Sequence

>CNT30371283
AAAAAAAGATCAACCAAACTTGAATGCACATCAATTTAGGTACACAAAATTAATTAAGTTTTCAAATTGAATAGTAACAGCCAAGCATCTCTTACACAGG
TTTACAATAAACCTCACCATCCATGACACTTAATTGACCTCCCTTTCTCTTTTCAGTATACATATATATGCTACTACCAACCAAACCACCCATACATGAC
ACATTCAAAACAAAGTAATAATTTTTTTTTCACTTTTTATCCCTACCAACACACGGCAAAAGGGAATAACTTTTTAATTCGATAACGTTGTTGTTGTAGT
AGTAGTTATTATTAGGAAATATATATATATATCGATATCGATATATATATAATTTTTTTTTATGATCGATGATAAAAGATGACGTGTGGCGTACGTAGGC
CGGCCGGCGGCGACCATGGCGGAGCGCTCAGGCGGCTCACGTTGGGCCTCAGGCCGAGCATCTTGGCGAGCTGGTAGTCGGCGCCGGGCATGTCGACGCC
GGAGGTGGTGCAGAAGACGAGGTGGGTGAT