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Detailed information on CNT30371248


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297025Oryza glumipatulaTriticum aestivum28.4147.3595.2125forward
CNT30223766Oryza glumipatulaHordeum vulgare32.529.4890.91143forward
CNT30555270Oryza glumipatulaOryza glaberrima74.0970.41100326forward
CNT30663056Oryza glumipatulaTriticum dicoccoides16.8230.0897.374forward
CNT30117797Oryza glumipatulaOryza nivara81.5954.39100359forward

Expression of CNT30371248

Peptides detected in this lncRNA

>peptide 1 (87 aa)
KIQTKKNPGKPFSNVNDDENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 2 (65 aa)
KFKQKKIQGNHSAMSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

Sequence

>CNT30371248
CAAAATTCAAACAAAAAAAAATCCAGGGAAACCATTCAGCAATGTCAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCA
GCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAA
CACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACA
GGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGAGAGGTTGATGGGGATGCTGTTGCC
GAAGTAGTTGAGGGTGTTGCCGTCCAGGAGGAGGGCGCCG