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Detailed information on CNT30371243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697275Oryza glumipatulaOryza sativa75.8749.7196.05937forward
CNT30553641Oryza glumipatulaOryza glaberrima66.8874.3595.52826forward
CNT30108528Oryza glumipatulaOryza longistaminata53.299.795.28657forward
CNT30100442Oryza glumipatulaOryza rufipogon75.7927.796.26936forward
CNT30575705Oryza glumipatulaOryza barthii71.8250.3195.6887forward
CNT30117644Oryza glumipatulaOryza nivara71.8250.4394.81887forward
CNT30593965Oryza glumipatulaEragrostis curvula4.6220.2894.7457reverse complement

Expression of CNT30371243

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMHSHGSVIWVFIHDP*

>peptide 2 (42 aa)
MALTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQEPCIAMGV*

>peptide 3 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

>peptide 4 (31 aa)
MHKSCVCFTSSRLYLLSILYSLLCLIWFLGT*

Sequence

>CNT30371243
AATAGATGTGAGCCGTTAGATCTTATTTAGTCTCTTTATATAACCAACCAAAAAAAAACAAACGAAAAAAAAAAGAAACAGGAGAATCGCTCCTGTAGCC
CTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTGTCTTCGCCGGCGCCGCCGCTGGTGTAGCCGTCGCCGGTCGCCACAGCCGTCGT
CGTCCACAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAAT
TTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTGTGGAAGGTTCCAACGTTGGAGGAGTTGAGTCGGAGTATCGAAGGAG
TTAAGGCAAGTGCAAGACGGACTTATGTGATGGACAAACTGAGTTGTTTTGTTTGGCTTTACTTGCATAATTATTATTCAATTGCTTGATATTACTGATT
GTATGGCTCTGACGTTATGCTACTTATTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGGATGTTCTGTTTACATTAT
TCAAGAACCATGCATAGCCATGGGAGTGTAATTTGGGTCTTTATTCATGATCCTTGAGAAGCGCGATCAGAAGCGCTGATCACGCTTGCTCGGCTTACCG
GTAATGCTAAGAGGATATTCACACCTGCCCGGGAGGGAACTACTATCTTTTGACTTCTTTGGTTTAAAAATAAAGTAAATCCAACCCTTCATATTGGTTT
CTTAATGCATAAATCATGCGTATGTTTTACTAGTTCAAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAA
TGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAACTGAAATTAAGTTTAAAACAAATTTTTTGCTCAGCATA
AGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTCACGTGGGATTTGTGGAGCTGGGATGGTTTGGATTGTGTGGTTTATATC
GGTATTGACCTTTCTTATAACTGCCTGTCGTGATGTCCGTATTTTTAGGGGAGATTCTGCCGAAATTTCTAATAATTTTAGGACCTAGTTTTTGAGTGTA
TTTTGGTGTGGCATTTTAGGTACGTGGTTACCTGG