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Detailed information on CNT30371232


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524528Oryza glumipatulaSetaria italica12.6820.2793.28134forward
CNT30184672Oryza glumipatulaSecale cereale13.1542.1293.53139forward
CNT30390869Oryza glumipatulaTriticum turgidum15.4234.6894.48163forward
CNT30555402Oryza glumipatulaOryza glaberrima46.4561.0798.57491forward
CNT30151052Oryza glumipatulaBrachypodium distachyon10.6948.7192.04113forward
CNT30581942Oryza glumipatulaEchinochloa crusgalli11.7326.6792.74124forward
CNT3039554Oryza glumipatulaMarchantia polymorpha9.2726.7893.8898forward

Expression of CNT30371232

Peptides detected in this lncRNA

>peptide 1 (65 aa)
KFKQKKIQGNHSAMSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

>peptide 2 (68 aa)
MKNPSMENMASRPFLISFTFSSAAWSGSLASPSGSNGPPGWSLSSRSCTTIAIAGESPVSISEQNQQV*

>peptide 3 (87 aa)
KIQTKKNPGKPFSNVNDDENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

Sequence

>CNT30371232
CAAAATTCAAACAAAAAAAAATCCAGGGAAACCATTCAGCAATGTCAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCA
GCCACAAATCCAAACACTTGGTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAA
CACATTCTTCCACCCTTCTCAAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACA
GGCTGGGCGTTCTCGACGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATCTCCTTCA
CCTTCAGCAGCGCCGCCTGGTCCGGGTCGCTCGCCAGCCCCAGCGGGTCGAATGGGCCACCTGGGTGGAGCTTGTCCTCCAGATCCTGCACCACCATCGC
CATCGCCGGCGAATCTCCGGTGAGTATCAGCGAGCAAAATCAACAAGTGTAGACTAACTAAGGTCCCGTGTTTGAGTTCATCGAAGATAAATTAAGGGTA
CTTCAAATGAGAAAGCTATTAGCGTTTGATTAATTGAGTTCTAATTACTTTAAGTTTGAAAGAGGATTTAAAATTTTTATATAAAAAGTTCTCGTATGAA
ATACACCATTCAACAAATTGGAAAGCGTGCTACCGGAAAAAAAAAATGTAAGACTAATTAAGTTTTAATTATTTTAGATTTGGAAAAGGATCTATCTGAT
ATTTTAAAGCAATTTTCATATACAAAGTTTTCGTACGAGATATAGCATTTAACAAATTGGAAAGCATGCTACCGGAAACCAAAAGGTGTAAGACTAGGGC
GTGTAGATTGTGCAGTTGACTGACCAGGCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCGGCGGCGACGGCGACGATGAGGTTG
ATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCCAGGAGGAGGGCGCCG