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Detailed information on CNT30371228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000770, E-value = 4e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554027Oryza glumipatulaOryza glaberrima32.1595.3884.14227forward
CNT30578546Oryza glumipatulaOryza barthii46.7489.4386.36330forward

Expression of CNT30371228

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PAEVPSGSSEALSGRRKGTVGLVSSLGVIVVRDLWVKHLAILCT*

>peptide 2 (36 aa)
MLPVEDQSQLSLNHLKSSEVVVRGPLRYWRSRTSTI*

Sequence

>CNT30371228
CCCCAGCCGAAGTTCCCTCAGGTTCCTCAGAGGCCTTGTCAGGACGGCGTAAAGGAACAGTAGGATTGGTTTCATCTCTAGGTGTCATCGTGGTAAGGGA
TCTCTGGGTAAAACACTTGGCAATATTGTGTACCTGATATCAACTTTGTTGGAGTAGAGGTAATGGGAGGATCGCTACACTGCTGGTCGAAAACCAGTTG
TAGCCCCAACTCAACCACTTGAAGTAAAGGTAGTGGGAGAATCGCTACACCACTGGTCGAGGACCAAGTAGTAGTCGCAACTCGACCACTTAAAGTGGAA
ATAGTGGGAGAATCGCTACACTGCTGGTCGAGGACTAGGTAGTAGTCGTAACTTGACCACTAGAAGTAAATGTACGAGAGATCGCTACGATTGACTGGTT
GAGAACCAGTGAGTAGGTGTCTCTCGACCATTTGAAGTTGGTACGAGGGCCGCTATGCTGCCGGTCGAAGACCAGTCGCAGCTGTCCCTCAACCATCTGA
AGTCATCTGAAGTCGTGGTGCGAGGACCACTACGCTATTGGCGTAGTCGTACCTCGACTATCTGAAGTTAAGACGCGAGAGATTTCTACGATTTACTGGT
TCGAGAACCAGCGAGCGAGTAGAATTATCTCTCGAAGACCAATGGAAGTTGTGGTGCGAGAGATTGCTACGATTTACTGGTTCGAGAACCAGCGAGCGAG
TAGAAT