Detailed information on CNT30371142


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001125, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694650Oryza glumipatulaOryza sativa90.2766.3895.391216forward
CNT30596363Oryza glumipatulaOryza meridionalis75.1399.794.471012reverse complement
CNT30109162Oryza glumipatulaOryza longistaminata90.1370.1396.621214forward
CNT30102110Oryza glumipatulaOryza rufipogon84.1154.7695.321133forward
CNT30576376Oryza glumipatulaOryza barthii87.2344.1495.41175reverse complement
CNT30115711Oryza glumipatulaOryza nivara90.5751.9688.441220forward

Expression of CNT30371142

Peptides detected in this lncRNA

>peptide 1 (63 aa)
PTSLPFVHRRAGAHSLPLLCNRQEKEERKKMTGGRRRRRKGKERLTVEFIVFWMATYGISRIG*

>peptide 2 (45 aa)
MVFRESDNQVAYLGFICVGARQVIIPPLEHNYPIFNISILCISHS*

>peptide 3 (30 aa)
RRRCLSSTGEPAPTLSLSSVTGKKKKRGRR*

>peptide 4 (62 aa)
MGTDLDIMLLNNVVPLYSGSYVSPREGGKYMPRRANVIFTEAQVNILIIARCVCDFMKTWLR*

>peptide 5 (48 aa)
MTKLMIIGKLWTVGKAYIYCSMNILKTIRIAVLTDLSIGTHMVLWLEI*

Sequence

>CNT30371142
GCCGACGTCGCTGCCTTTCGTCCACCGGAGAGCCGGCGCCCACTCTCTCCCTCTCCTCTGTAACCGGCAAGAAAAAGAAGAGAGGAAGAAGATGACGGGA
GGAAGAAGAAGGAGAAGAAAAGGAAAAGAAAGACTGACAGTAGAGTTTATTGTCTTTTGGATGGCAACCTATGGTATTTCGAGAATCGGATAATCAGGTT
GCCTATCTTGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTGAGCATAATTACCCGATATTCAATATTTCTATTCTATGCATTAGTC
ATTCATGATTTTGAATGCATAACCTGAACATATAGCAAACTAGTTATATGCTAGCTTTTGCTTAGCCCTGCCTAGTTAGATTGCATAAAAATATAATGAA
CTTAGATTGGGACAGTACGTAAGATTTGGTTGATTTCCGGGTGGCTAGTACTGTCTCGGTCGATATAAGCTTACCAAGTACTTATGTCAAACGAACGAGT
ACGACCGCAGCTTCTAGAATGGGGACAGACCTAGATATTATGTTACTTAACAATGTGGTACCTCTGTACAGTGGTTCTTATGTAAGTCCTCGCGAAGGAG
GCAAATATATGCCGCGCAGGGCAAATGTGATATTTACCGAGGCGCAGGTAAATATCTTGATTATCGCGCGATGTGTGTGTGATTTTATGAAAACCTGGTT
GAGATGACGTGGGGTCTCTCATCCAGTTCTCTCTGAAAAACCTCGGGAACACCAGAACTCCTCTCGCTGCTGCTAACGTTACTTTCAGAGCGCATGGGGA
CTAGAGTTCATGGAACATGTGCCACAATTGTTAATAACCTAATACTAGGCCATGACTAAGCTAATGATTATTGGCAAGTTATGGACTGTGGGTAAAGCGT
ACATCTACTGCAGTATGAATATCCTTAAAACTATTCGAATAGCCGTGCTCACGGATTTGAGCATCGGGACTCATATGGTACTTTGGTTAGAAATATAATT
CAAGATTTTCTTAAATACTGCTGCATATCAAGCATTTCAGGATTTCTACCTCTTTATTTTCAGCCTTCTGCAAGTAAATCTAGCTCTACACAGATATTAC
CTCTCATGCATTCATTGTTGAATAATATAATAGCTTTGTTGAGTACGTTGTACTCACCCTTGCTTCAACCCCTCTTTTTCAGAGTTTAATTGGAGTTTTT
GCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTCCCTTTAAACCTAATCTTCAAGTCTAGTATAGTTAAACGGTTTAATTCTATAGTAAAACGGCAGAG
TTGAGTCATCGTATAGCTTCTGCTGTAATAGTTAGCCACAAACTTGT