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Detailed information on CNT30371139


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673704Oryza glumipatulaSetaria viridis57.5848.5597.19285reverse complement
CNT30513357Oryza glumipatulaJuglans regia24.8518.5595.93123forward
CNT30525798Oryza glumipatulaPhaseolus vulgaris46.6729.9294.81231forward
CNT30177674Oryza glumipatulaSecale cereale62.8315.3297.11311forward
CNT30221081Oryza glumipatulaHordeum vulgare62.8315.3697.75311reverse complement
CNT30394116Oryza glumipatulaTriticum turgidum62.8375.1297.11311reverse complement
CNT30555411Oryza glumipatulaOryza glaberrima49.761.0498.37246forward
CNT30662247Oryza glumipatulaTriticum dicoccoides34.1449.2796.45169reverse complement
CNT3017925Oryza glumipatulaZea mays62.8327.2698.71311reverse complement
CNT3067405Oryza glumipatulaLeersia perrieri55.3566.1893.8274reverse complement
CNT30203328Oryza glumipatulaHelianthus annuus62.8337.7995.18311reverse complement
CNT30680054Oryza glumipatulaTriticum urartu62.4216.9498.06309forward
CNT30596724Oryza glumipatulaOryza meridionalis22.224.55100110forward
CNT30409295Oryza glumipatulaPapaver somniferum62.8355.0495.5311reverse complement
CNT30149641Oryza glumipatulaBrachypodium distachyon62.8315.4398.39311reverse complement
CNT30102660Oryza glumipatulaOryza rufipogon62.8383.1695.82311reverse complement

Expression of CNT30371139

Peptides detected in this lncRNA

>peptide 1 (52 aa)
FKALLRQAFAHCGKFPTAASRRSLGCVSVPVWLIILSDQLLIIALVSYCLTN*

>peptide 2 (32 aa)
SRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

Sequence

>CNT30371139
TTCAAGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGA
TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGACGAATTTCTCCTTT
TGCTCCTCAGCCTACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCACTGGAAACA
CCACTTCCCGTTCGACGGATCTGTTACAAGATCAATTCGGACTGGCTCTTGATCGTTTACAACATGCGGTTCAAAAAACTATCCGTAGAGTATTCATACG
TCAATCAAAACCGACTCCACAAACTTTGGTAACTCCAACTTGAACCTCGATTTTATTAATAACTACTTATGAGACTTTCTTTGGTACATATCCCT