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Detailed information on CNT30371090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Oryza glumipatulaOryza sativa99.3869.6298.75479forward
CNT30675796Oryza glumipatulaSetaria viridis20.5422.9791.9299forward
CNT30305074Oryza glumipatulaTriticum aestivum20.1215.4790.7297forward
CNT30554828Oryza glumipatulaOryza glaberrima85.8979.3197.58414forward
CNT3012962Oryza glumipatulaZea mays20.1214.988.6697forward
CNT30352420Oryza glumipatulaEragrostis tef20.7516.1696100forward
CNT30367015Oryza glumipatulaSorghum bicolor20.1217.2991.7597forward
CNT30107297Oryza glumipatulaOryza longistaminata61.4165.9299.66296forward
CNT30149623Oryza glumipatulaBrachypodium distachyon20.1220.2186.697forward
CNT30103269Oryza glumipatulaOryza rufipogon99.3853.2899.37479forward
CNT30577638Oryza glumipatulaOryza barthii62.2446.399.33300forward
CNT30584451Oryza glumipatulaEchinochloa crusgalli20.5418.4793.9499forward
CNT30594767Oryza glumipatulaEragrostis curvula12.8624.0395.1662forward

Expression of CNT30371090

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTTMALSRPPPSCSRRRRPPAAACRRQPRRTRPRRCS

Sequence

>CNT30371090
CCAGTGTCAACAAGAAGCTCAGTTCAAAATAGCATATCAAAAAAATTGTATCAAAGATAGATGTACTACTACGATGTAAAGAGATGGGGGCAACAGAGAA
AAAAAAAAGGCCCATTCAAGCTAAGAACAAAGTGGAGATAATGCAGAACAAAGAGTTACTATAAAAGGGCTAATGCAGAATAAGAAAATACAGATTCTGG
ATTAATTAACTAGCATATTTAAATTTAAAACGTAACTGTTTGAGCAAATACCAAGAAATGTTCAGGCGCTAAGATACGGCAATACCGATACATCCAGCAT
AGCAAAAATGGCGAAGAGCACAGAGTCAGATAAAGCTATAGAGAACTAGGGCTCCAGGAGATGGGGGCCGAATGACAACCATGGCGCTTAGTCGACCTCC
TCCATCTTGCTCTCGCCGGCGTCGTCCTCCAGCGGCGGCATGTCGGCGTCAGCCTCGGCGGACTCGTCCTCGTCGATGCTCA