Detailed information on CNT30371086


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30301056Oryza glumipatulaTriticum aestivum39.198.7593.1116reverse complement
CNT30401480Oryza glumipatulaTriticum turgidum39.1916.0993.1116forward
CNT30667262Oryza glumipatulaTriticum dicoccoides34.465195.1102forward
CNT30149997Oryza glumipatulaBrachypodium distachyon39.1936.4893.97116reverse complement
CNT30577762Oryza glumipatulaOryza barthii48.3145.9896.5143forward
CNT30604150Oryza glumipatulaOryza punctata48.3126.3897.9143forward

Expression of CNT30371086

Peptides detected in this lncRNA

>peptide 1 (48 aa)
REGAPCPFLIQCRIDERVFGFEEKSRNSIHFNFLFFYLVFLNEIENFN*

Sequence

>CNT30371086
TACGAGAAGGGGCACCCTGCCCTTTTTTAATCCAATGCCGAATCGACGAGAGAGTTTTTGGATTTGAAGAAAAAAGTAGGAATTCTATCCATTTTAATTT
TCTATTTTTCTATTTAGTTTTTCTTAATGAAATTGAAAATTTTAACTAAAGGGCAAATACAAATAAAAAAACAACTTTGCTGCCCACGATAGATTTTTAT
CTAGGCGGAAGAGTCCTCTTAATATTTATCTAGTCTTATATGGGTTTCGGTATATTGAAATATAAACAGAAAAGAGAGGGTAGAGGAAAGGGTTTG