« Back to Oryza glumipatula search


Detailed information on CNT30371046


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694301Oryza glumipatulaOryza sativa28.4515.3192.42132forward
CNT30105769Oryza glumipatulaOryza longistaminata35.9920.9391.62167forward
CNT30104758Oryza glumipatulaOryza rufipogon20.2612.5794.6894reverse complement

Expression of CNT30371046

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MQPKLRCGTVFCYDCGSSFNPRMYSCKCTPRKSSQSEEEDGFIDLTCSDRQLNLGNHC*

>peptide 2 (42 aa)
GFQPSPVVLGVSPLVPLLLLLLVFPRPCRRLYSRAVLKCNLS*

Sequence

>CNT30371046
CTGGTTTCCAGCCGTCGCCTGTGGTGTTGGGTGTTAGTCCGTTGGTTCCGCTGCTGCTGCTGTTGTTAGTGTTTCCTCGTCCGTGTCGTCGGTTGTATTC
TCGGGCTGTTCTGAAATGCAACCTAAGTTAAGATGTGGCACTGTGTTTTGCTACGACTGCGGTTCATCCTTTAATCCGAGAATGTATTCATGCAAGTGTA
CTCCTCGCAAATCTTCACAATCGGAGGAGGAAGACGGATTCATCGACCTTACTTGCTCAGACCGTCAGCTTAATCTGGGGAATCATTGCTAGTAATGTTC
TGTAGCGAGTCGGCGATCATTCGATTCAACCTGTTTCCATTACTCCATTTGTATATGCGGAGTTCTTGTTCTTGACGGAAACGATAATGATATGTCGCGA
TTTCTCATCGACCAATATTTGGAACATTTTTTTTTTCATCTGTATATAGCGACTAGTGAGTATG