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Detailed information on CNT30371011


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696274Oryza glumipatulaOryza sativa85.2356.799.64554forward
CNT30522718Oryza glumipatulaSetaria italica35.0830.9495.18228forward
CNT30224983Oryza glumipatulaHordeum vulgare31.8533.9397.1207forward
CNT30393906Oryza glumipatulaTriticum turgidum31.8528.7997.58207forward
CNT30555034Oryza glumipatulaOryza glaberrima100.3161.8698.77652forward
CNT30721767Oryza glumipatulaTriticum spelta31.8527.5697.58207forward
CNT30108138Oryza glumipatulaOryza longistaminata8870.6298.95572forward
CNT30149001Oryza glumipatulaBrachypodium distachyon30.1547.4693.88196forward
CNT30103465Oryza glumipatulaOryza rufipogon100.9257.2997.71656forward
CNT30577669Oryza glumipatulaOryza barthii8860.9298.43572forward
CNT30579831Oryza glumipatulaEchinochloa crusgalli31.8522.7596.14207forward

Expression of CNT30371011

Peptides detected in this lncRNA

>peptide 1 (58 aa)
FKALINPSMPQYKQFRLHIYTIHSQKWLYFGIGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (42 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGLGLPR*

Sequence

>CNT30371011
TTTAAAGCACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATCGGGA
GTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTA
TTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACA
ACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCC
AGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAA
CATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGCTCGGGTTGCCGAGGTAGTCG
AGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTC