Detailed information on CNT30370987


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 2e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695874Oryza glumipatulaOryza sativa96.6762.6199.7668forward
CNT30589591Oryza glumipatulaMusa acuminata57.7470.7486.97399forward
CNT30554923Oryza glumipatulaOryza glaberrima100.2962.6699.13693forward
CNT30684416Oryza glumipatulaTriticum urartu50.0740.2891.04346forward
CNT30103422Oryza glumipatulaOryza rufipogon103.3355.0596.5714forward
CNT30117559Oryza glumipatulaOryza nivara96.2462.599.1665forward

Expression of CNT30370987

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KWLYFGIGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (31 aa)
RNGYILGSGVFVSDLIEMRNPLIRITPQIST*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30370987
AGAAATGGTTATATTTTGGGATCGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCA
TTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACT
AAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGC
CGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACAT
GGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCG
GGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGA
TGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTC