Detailed information on CNT30370968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 3e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523179Oryza glumipatulaSetaria italica42.0760.5192.22167forward
CNT30553408Oryza glumipatulaOryza glaberrima83.6343.496.99332forward
CNT3099993Oryza glumipatulaOryza rufipogon81.8655.6594.77325forward
CNT30577476Oryza glumipatulaOryza barthii100.2535.8992.21398forward
CNT30116624Oryza glumipatulaOryza nivara83.6332.0896.69332reverse complement

Expression of CNT30370968

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MKAIICKRTGLGKAGRYKIVSEPTLAVSRARVSQLRRHGAHGWCRPGVVTRSWPGVDRRGRRSLLRG*

>peptide 2 (29 aa)
STSCNFFSGSQSPKNSGVKRAWPGAIWDG*

>peptide 3 (60 aa)
QQVATSFPEANLQKTPGLSVLGLEQFGMGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30370968
TCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAAAACTCCGGGGTTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGA
AATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCATATGTAA
GCGGACCGGCCTGGGTAAGGCTGGTCGTTACAAAATAGTATCAGAGCCGACTCTCGCGGTTTCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTGCG
CATGGCTGGTGTAGACCGGGAGTGGTTACACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTGTTAAGGGGGTGAGGGTGTAACATCC