Detailed information on CNT3037096


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546900Cucumis meloIpomoea triloba40.4321.1787.5112forward
CNT30375732Cucumis meloArabidopsis thaliana31.779.8486.3688forward
CNT30477290Cucumis meloArabidopsis halleri41.8818.7782.76116forward
CNT30621639Cucumis meloCajanus cajan48.7413.8282.96135forward
CNT30356457Cucumis meloLactuca sativa38.6319.5684.11107forward
CNT3024510Cucumis meloPopulus trichocarpa20.5810.287.7257forward
CNT30723266Cucumis meloLupinus angustifolius43.6818.1182.64121forward

Expression of CNT3037096

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RRIGCVEATRSQLGEDALLFHRSLRLSRGRRRRRSKLHRRLWRLPRRC*

Sequence

>CNT3037096
AGGCGAATCGGTTGTGTTGAAGCCACCCGGAGTCAACTCGGGGAGGACGCACTGCTTTTTCACCGGAGTTTGAGGCTGAGCCGTGGGCGACGGCGGCGCC
GGAGCAAACTTCATCGTAGGCTCTGGCGGCTTCCTCGGCGGTGTTGAAAGTGCCCAGCCAAACTCGAACTCCCTTTCGTGGGTCCCGAATCTCCGCCGCC
CATTTTCCCCACGGCCGTTGCCGGATTCCTCTGTATAAATTCTTCCGAACTTTTCGAGTCTTCTCCACCGCCACCGC