« Back to Oryza glumipatula search


Detailed information on CNT30370885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Oryza glumipatulaOryza sativa65.2781.6299.78453forward
CNT30522541Oryza glumipatulaSetaria italica36.7452.894.9255forward
CNT30710396Oryza glumipatulaGlycine max21.3330.2785.81148forward
CNT30122581Oryza glumipatulaPhyscomitrium patens22.7722.4182.28158forward
CNT30299532Oryza glumipatulaTriticum aestivum33.5745.6994.85233forward
CNT30228866Oryza glumipatulaAnanas comosus33.8626.8988.09235forward
CNT30362113Oryza glumipatulaSorghum bicolor19.7420.6995.62137forward
CNT30596794Oryza glumipatulaOryza meridionalis98.56103.1791.96684forward
CNT30148202Oryza glumipatulaBrachypodium distachyon32.8541.8390.35228forward
CNT30499040Oryza glumipatulaDigitaria exilis30.2630.8890.95210forward
CNT30558912Oryza glumipatulaPanicum hallii9.6526.0795.5267forward

Expression of CNT30370885

Peptides detected in this lncRNA

>peptide 1 (35 aa)
INTLMNTHQNSPNIYYNIIRRDYIPPSIDYTIINN*

>peptide 2 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

>peptide 3 (59 aa)
MERVDERGFAGAQAARRWHLAAEACVAMAMVVGGGERRVPCGGFDSSGVVWRREISEME*

>peptide 4 (67 aa)
MSAASPVPRRRGGGTWRRRLAWPWPWWSEEERGGYRVADSIRVVWCGGERYRRWSREKPKKKRGEMGE

Sequence

>CNT30370885
AATTAACACGTTAATGAACACGCATCAAAATTCACCAAACATATACTACAATATTATAAGAAGAGATTATATCCCACCATCGATCGATTACACCATCATC
AATAACTGAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGAA
GTCTAGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGG
CGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGA
GCGGAGCCTGGTGCCCAGGGCCAGGCACTGCTCCTTCCTGGCCAGCTTCAGCAGGTGGGTGCCCTCGAGGTGGGCATGGAGAGGGTGGATGAGCGCGGCT
TCGCCGGTGCCCAGGCGGCGAGGAGGTGGCACTTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGG
CGGATTCGATTCGAGTGGTGTGGTGTGGAGGAGAGAGATATCGGAGATGGAGTAGAGAAAAGCCCAAGAAGAAGAGAGGGGAAATGGGTGAGGA