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Detailed information on CNT30370843


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YUE5|Y8187_ORYSJ, E-value = 5e-80

BLAST vs NONCODE:
NONORUT006688, E-value = 2e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695757Oryza glumipatulaOryza sativa21.850.5398.41189forward
CNT30102990Oryza glumipatulaOryza rufipogon70.3680.1698.85610forward

Expression of CNT30370843

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHDIIDGGVYLKKKFSVRPIYKKELRNCMYEVE*

>peptide 2 (32 aa)
MLPKIVDNTTNRSWELTTSIINKIMYFHLVGS*

>peptide 3 (33 aa)
MFSPAASLKSSTQAFRFGSPLPAPPWTLRNSST*

Sequence

>CNT30370843
AATAATTCACACGATAGATAAATTTATTTCCGAAATTTGATAACAATGTTACAAATGTGGCGTGCATGCGATCAATGTGTGGGAAGCAAGTATCACAATT
AATTAATTGAAATACAAAAGTATGCACGATATAATCGACGGTGGTGTGTATCTCAAAAAAAAATTTAGCGTAAGGCCTATATATAAGAAAGAACTGAGGA
ATTGTATGTATGAAGTTGAATGAAAAAATGATATATAATGTAGAATTGAGAGTTGGGAATATATGAAATAGAAAATTGAGAAAAACAATGTTACCAAAAA
TCGTGGATAACACCACTAATCGATCATGGGAATTAACAACAAGTATAATAAATAAAATAATGTACTTCCACTTAGTAGGTAGCTAGAGAGCATGCATGGA
AGGCTATATATATAGCTGGATTATTAAAGTTTTATGTGATTGATGAGGGAGCTAGCTGTGTTGAAAGTATATCCAAGGGTTTTCTGGGCGGGGAGATCAT
CGCTATAAGTGAACAGGTAACCTATCTCGCAACCGGATGCTTTCCCGATCCCACCGTTGTAGGGTTTCTCCACCCCTTTGATCCACTTTTGCGCATTCTC
CAGATCCTCCTTGCTGCGCTTGCCATTTCCGGCAGCGGCGAGGCGGCCGAGGCTCTGCAGCGCCTCCCTGGTGATGTTCTCGCCGGCGGCTTCGCTGAAG
TCATCGACGCAGGCGTTCAGGTTCGGGTCCCCCTTGCCGGCCCCTCCCTGGACCTTGCGCAATTCGTCGACGTAGACCCAGAGGACGGTGGCCATGCTCG
AGCTCGACCTGCTCATTTCTGTATATTATTTATCTCTCTCTCTCTCTCTCTCTCTCTGCTTGTTTCG