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Detailed information on CNT30370833


BLAST search results

BLAST vs Swiss-Prot:
sp|P80498|COX2_SOLTU, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618782Oryza glumipatulaSesamum indicum40.739.9791.01178forward
CNT30631488Oryza glumipatulaVigna unguiculata26.7727.7988.03117forward
CNT30170457Oryza glumipatulaPistacia vera24.268.3587.74106forward
CNT30592667Oryza glumipatulaMusa acuminata47.1419.4791.75206forward
CNT30574573Oryza glumipatulaVitis vinifera41.654.5393.41182forward
CNT3099983Oryza glumipatulaOryza rufipogon38.934.84100170forward

Expression of CNT30370833

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNEESLEFPIFFSSAPRKETDLDVGVGFSNEKREHNRTDPTKQSLEPFTIHDRRTSFTLYD*

>peptide 2 (31 aa)
MIGELLSLYMIKQVSLPIPYPLVKLHLRESEY

Sequence

>CNT30370833
GCTCGTTGAAATGCCATAAAGCGCGAACCAACATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCAATGATTCC
TTGCATCATAGGTGTTGCAGCGTCTTGAGATCCTAATTGCCATGGTTCCGCAGCATCACAAAGAGCGATTGTGAGGAATCGACATTCTAATGAACGAAGA
ATCATTGGAATTTCCCATCTTTTTTAGCTCTGCTCCTAGAAAGGAGACTGATCTTGACGTCGGCGTTGGTTTTTCCAACGAAAAACGAGAACATAACCGG
ACTGACCCAACCAAGCAATCACTTGAGCCATTCACAATCCATGATAGGAGAACTTCTTTCACTTTATATGATTAAACAAGTGAGTCTTCCGATTCCGTAC
CCTCTGGTGAAGCTGCATTTACGCGAGTCGGAGTATG