« Back to Oryza glumipatula search


Detailed information on CNT30370734


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553221Oryza glumipatulaOryza glaberrima93.0340.0893.091736forward
CNT30596399Oryza glumipatulaOryza meridionalis91.6973.8189.071711forward
CNT30107287Oryza glumipatulaOryza longistaminata92.8756.4793.251733forward
CNT30100733Oryza glumipatulaOryza rufipogon92.7786.7792.951731forward
CNT30575721Oryza glumipatulaOryza barthii92.1299.9492.321719forward
CNT30117985Oryza glumipatulaOryza nivara93.3594.7390.991742forward

Expression of CNT30370734

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MLTLLPCGKLGLFQITCLKIRYVVPRSCEIKCVVKVVMMRSHAFMVWLRIIVKDRFLWENSSEHVTMRPHGYLWDASG*

>peptide 2 (57 aa)
MRFSWVSFGKALSRTSGTGQYRCKFRVVWVKRATSAEINELFEQPCPWSRASVRCFS*

>peptide 3 (63 aa)
MGCLWLNKLFSHGSWCANGCRMPRMRRRSVTHFCPSWVSFCLYCGVVPVGVGGMRHPWYFLSG*

>peptide 4 (33 aa)
MGVFLPLLWRGTGRSRRHEASLVFPEWMTAVIV*

>peptide 5 (38 aa)
MPLWFGYVLLLRTDSFGKIHPNTLQCDHTGIYGMPLAK*

>peptide 6 (31 aa)
WDWDRAARGGGRQPPQPLTTGSHAPFPPSCH*

Sequence

>CNT30370734
CTGGGACTGGGATAGAGCAGCGCGTGGAGGAGGAAGACAACCTCCTCAGCCGCTGACAACCGGGTCCCACGCCCCTTTTCCTCCATCTTGCCACTGACAA
GCCGGGCCCACGCCTTTCCCCCTCCAGTCAACCGCTGACAGAGCCCGAGTTCGAGGAAGTTCCGGACGCCGCTTTCGAAGGAGAAGACCCCAACCCTGTG
CAGGGCAAGCTTCTTTGATCATATTGCCCCTATATTTGCAATGATATGTTGTTTGCAAAAATGCATTGCTAGTATACACAATTAACATGTTAGGCCTCGG
ATTGTTTATACAACCGACGGATCAACCTAGTAGTCGCACTTATATTTCATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATATTTGCGCCGGTA
TCGTTATACGATTACCGAGGTAGTTTCGCTTAGCCATGCTTACGTTGTTGCCGTGTGGAAAACTTGGGTTATTCCAAATTACATGTTTAAAAATCCGGTA
CGTTGTACCGAGGAGTTGTGAAATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCATGCCTTTATGGTTTGGCTACGTATTATTGTTAAGGACCGA
TTCCTTTGGGAAAATTCATCCGAACACGTTACAATGCGACCACACGGGTATTTATGGGATGCCTCTGGCTAAATAAATTGTTTTCACATGGGAGTTGGTG
TGCCAATGGTTGTAGAATGCCGAGGATGAGGAGACGAAGTGTTACACATTTTTGCCCATCATGGGTGTCTTTTTGCCTCTATTGTGGCGTGGTACCGGTA
GGAGTAGGAGGCATGAGGCATCCTTGGTATTTCCTGAGTGGATGACGGCTGTCATTGTCTGATACTCGGCTATGGATCTTAGCCCAACTAGGTGGCATGC
GATTTTCATGGGTTAGCTTTGGAAAGGCCTTATCACGAACTTCCGGTACCGGCCAGTATCGGTGTAAGTTTCGTGTCGTGTGGGTAAAGCGTGCAACCTC
TGCAGAGATTAATGAACTGTTCGAACAGCCATGCCCATGGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCATAGATTTGTTTGACAATGGTTTGTGGAA
AAGTGGTTACTGAAAAGGGAACGTTACCAGAGTCCGCCTGTGTGGCAGACGGCTAACCTTTGTGGTTAGGAACGGGTCTGTGTGACCTGGGGTGTCGTCC
GACACCGAGGTGTTGTTAGGGCCATGATGGCGTTGATGCGCTGGGATAACCAGGAGATTTGTGTGGATTAATGTTGTTGTGAAAGTGAAAAGGAACTAAT
AGAGGAGACAAAATATTTGTTGTTCGTTAATCGTGACAAGTTGTTGCAAAGCAACTTGTGGAATGGGTCGAGGCATGAGCCACCTCCCGACAACTAAAAC
TTGACTCACTCACTAGGAGTTTTGTGAAATAAATCACTTTGCCAAAAAGGCAGCTTTCGCAAATAAAATCGTAGCCTCCGTGTTAAACCGACATGTCATC
CTTTTCCCCGGCTTGCTGAGTACGTTAAGTACTCACCCTTGCCCCTTATAATAATCTTAGAGTTTGAAGACGAAGACGCCGACTCGACCGCCAAGGAGTA
TTTCCAGGAGTAAGCCGAATATGAAGACTTTTAGATGTTTCGTGCCTAGCACCAAGCCTTGCCTGTGGAATAAGTTAGTTGCCTAAGTTCTTTGCCTAGT
GCGTAGTCGCTTAGTCGTTTAGTTCTCCGCGTTGTTCGCTTCTGCGCCGTCGATTTTGTGGTTCTCTGTAATGTTGTGTTGCTCATCTGTGGGCCTGTCC
ATGATGGCAACGTTTGTAAGGACTACTAACCAGTGATGTAATAAAATAGTTTACTTTGATCCCACA