Detailed information on CNT30370727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 7e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Oryza glumipatulaSetaria viridis41.341.8692.13216forward
CNT30386449Oryza glumipatulaTriticum turgidum23.3324.794.26122forward
CNT30361377Oryza glumipatulaSorghum bicolor38.4317.8593.53201forward
CNT30577068Oryza glumipatulaOryza barthii88.1598.7298.05461forward
CNT30496422Oryza glumipatulaDigitaria exilis38.6232.7491.58202forward
CNT30593977Oryza glumipatulaEragrostis curvula35.7684.2394.12187forward
CNT30551356Oryza glumipatulaOryza brachyantha30.445.9598.11159forward

Expression of CNT30370727

Peptides detected in this lncRNA

>peptide 1 (43 aa)
LKNSCAYASDQRHAQHICKFNQAPTVCAYICVAQREELLLPGN*

>peptide 2 (28 aa)
MLLTMRMQRKPWPTSLLSVHSTDSSWYSG

>peptide 3 (38 aa)
MLQIKDMHSIYASLIKPQLYVLIYVSPSERSSYCQVIN*

Sequence

>CNT30370727
ACCTGAAAAATTCGTGCGCATATGCTTCAGATCAAAGACATGCACAGCATATATGCAAGTTTAATCAAGCCCCAACTGTATGTGCTTATATATGTGTCGC
CCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAGATACAAGCACACCACACGATAATCATACGGTACGGACGAGCATAAGTTACTCT
TAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTGATATCAACTTGAGCCTTGATAGAGAGCTGGACCGATGTATC
GATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTA
CTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAGCGGAAGCCATGGCCGACGTCCTTGCTCTCGGTCCACAGCACC
GACTCGTCCTGGTACTCTGGGTT