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Detailed information on CNT30370717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006122, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695742Oryza glumipatulaOryza sativa99.5960.5886.49481reverse complement
CNT30554901Oryza glumipatulaOryza glaberrima99.5992.8686.49481reverse complement
CNT3066878Oryza glumipatulaLeersia perrieri25.0510.8988.43121forward
CNT30596675Oryza glumipatulaOryza meridionalis69.1533.7483.53334reverse complement
CNT30108911Oryza glumipatulaOryza longistaminata70.1915.5385.84339forward
CNT3099558Oryza glumipatulaOryza rufipogon20.2911.7294.998reverse complement
CNT30117788Oryza glumipatulaOryza nivara38.345.6890.27185forward
CNT30604461Oryza glumipatulaOryza punctata88.4151.7683.61427forward

Expression of CNT30370717

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MESSRSPLSNGSSLITKFHPSQPQMKKQGAASPVMGLWACNFVWDPGPSGAIWGAPQPGGARP*

>peptide 2 (30 aa)
QPLLTSWMNKKTSRSRPPSARIRFGHLLHC*

Sequence

>CNT30370717
CAACCATTGCTCACATCATGGATGAACAAGAAGACATCAAGGTCAAGGCCTCCAAGTGCTAGAATCCGATTCGGCCACCTGCTGCACTGCTGATTTCAAA
CGGCCGCCAAATCTCCATACGAGCTCCGTTTTTGGCTCGTAAGTACTTGATGGAAAGCTCTCGGAGTCCTCTTTCCAACGGATCCAGCCTCATCACCAAA
TTCCATCCCAGTCAACCGCAGATGAAGAAACAAGGTGCAGCATCACCTGTGATGGGCCTTTGGGCTTGTAACTTCGTTTGGGACCCCGGCCCAAGTGGGG
CCATATGGGGTGCGCCCCAACCAGGTGGAGCACGACCCTAGGACCCTCTTGGTCATTCTTCCACCCCTATAAGTAGCTAGGTACCCCTTCGGGGTTTCTC
GGGTTTTGATAGATTGAAGTTTAGCCATTGCTACTTCCTTGCAGCGCACGTGTCGGCTAGACCGTCCGTCTGCTTGTTCTTCG