Detailed information on CNT30370600


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Oryza glumipatulaOryza sativa44.5675.5691.09303forward
CNT30104237Oryza glumipatulaOryza rufipogon28.9766.7890.36197forward

Expression of CNT30370600

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRVIGKSVISTSQEAISCSKKFHLHINKKALM*

>peptide 2 (30 aa)
MSGGREARSDSIQCLKDLLCFLFSDFLLLG*

>peptide 3 (36 aa)
GLVASRRPTAMWLYGEGRPTACSSTASDVPPYISVS*

>peptide 4 (43 aa)
GARRLEEADGDVALRRGSTHRLFFNCFRCPSIYLSELIRRGRC*

>peptide 5 (37 aa)
MISISNLNEDRQIVIPGWFSGCVEVCNLQINSCIWLI*

>peptide 6 (35 aa)
WGSSPRGGRRRCGSTARVDPPPVLQLLPMSLHISQ*

Sequence

>CNT30370600
TGGGGCTCGTCGCCTCGAGGAGGCCGACGGCGATGTGGCTCTACGGCGAGGGTCGACCCACCGCCTGTTCTTCAACTGCTTCCGATGTCCCTCCATATAT
CTCAGTGAGTTGATTCGCCGAGGAAGATGCTGACTCGCCGGATCCCTTCATCCTGCCAATCTTCATTTTTTTTCCAGTTGCTTCCTACATGATCAGTATC
TCAAATCTCAATGAAGATAGGCAGATTGTTATTCCAGGTTGGTTCTCTGGATGTGTGGAAGTTTGCAATTTGCAGATCAATAGCTGTATATGGTTGATAT
AAATTTGAAGATCACTGGCTCTATATGGTTGATAACTTGATATGAGGGTAATTGGGAAATCTGTGATAAGCACATCTCAAGAAGCTATAAGTTGTAGCAA
AAAATTCCATTTGCACATCAACAAGAAGGCCTTGATGTAATTCAATCCTCTATTTGCTATGAGTGGAGGACGAGAAGCAAGGAGTGATTCCATTCAATGT
TTGAAAGATTTGCTTTGTTTTTTGTTTTCAGATTTTCTGTTATTAGGTTGAATCTGAGATGAAATATTGTTTGAATTCTGTTGTATTCTGATTGTATCTG
TTATTAGTTGAATCTGAGATGGTACCTGCAATTAGATTTGAATCTGAAATGGTACGAGAAATTGGATTGAATTTGGTGGG