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Detailed information on CNT30370560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110216Oryza glumipatulaOryza longistaminata38.833.5892.51227forward
CNT30101987Oryza glumipatulaOryza rufipogon38.837.2793.83227forward
CNT30576692Oryza glumipatulaOryza barthii23.9330.0492.86140forward

Expression of CNT30370560

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GLSGSQLTQPQRCCCDLRRDNGGAATVGVGEAGQAADREAPVLGAPST*

>peptide 2 (85 aa)
RALRLSAHAAAALLLRSAARQWRGGHRRSGRGGSGGGSRSPRAGGSLHIDGCSGQRAGEASSGGAASTIEDSESSSFHLNGTGMK*

Sequence

>CNT30370560
CGGGCTCTCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAATGGCGGGGCGGCCACCGTAGGAGTGGGAGAGGCGGGT
CAGGCGGCGGATCGAGAAGCCCCCGTGCTGGGGGCTCCCTCCACATAGACGGGTGCAGCGGGCAGCGAGCCGGCGAGGCCTCATCTGGCGGCGCGGCATC
GACCATCGAGGACTCCGAGAGTAGCAGTTTTCATCTGAATGGGACAGGAATGAAGTAAACTCTCGAGGCATTTCTTCTTGACCCACGGGAAGGAGCACAA
CAGTTTCACCAAAGAGAACCCTGTCTGTGACTACTTTCCTCAAGTCGTCGGGTAGGTGGCTTGGGAACATTGCCTGGACAACTGATGATTAACGTAAGAC
TGAGATTTCTAGTCAAATGTAGTCAAAGAAATTAAAGAGTAAAGTGGCGTCGTGAAACATTACAAGTATCAAATAAACGTCCTTAAAGACTTGAAAAGGA
AAAGGCTTTGATTTTGGAGTAGTATATATGTGAAGGCCTCTACTTTTTTTTTGTCATCTTTCAGTGACTTTGAATTTAGCAATAA