« Back to Oryza glumipatula search


Detailed information on CNT30370518


BLAST search results

BLAST vs Swiss-Prot:
sp|P14947|MPAL2_LOLPR, E-value = 2e-16

BLAST vs NONCODE:
NONORUT005906, E-value = 1e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694549Oryza glumipatulaOryza sativa68.0452.5689.67513forward
CNT3067584Oryza glumipatulaLeersia perrieri24.2723.2882.51183forward
CNT30576665Oryza glumipatulaOryza barthii55.4477.5590.91418forward
CNT30116939Oryza glumipatulaOryza nivara49.7360.8892375forward

Expression of CNT30370518

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVTLVMSSRLVSLEPSPTLKASSVAHEPEGGQRGH*

>peptide 2 (63 aa)
ICTQTLGNQIHTIILMKADQIYFFRYIFYKQHIFKIVLTYSSTTIFWNHAIMPYFAIGLLPKK*

Sequence

>CNT30370518
ACATATGTACTCAAACTTTGGGAAATCAAATCCACACAATCATCTTAATGAAAGCTGACCAAATATATTTTTTTCGATACATCTTCTATAAACAACATAT
ATTTAAAATCGTGCTCACATACAGCTCCACAACAATATTTTGGAACCACGCAATTATGCCTTATTTTGCCATTGGCCTATTACCAAAAAAATAACCATAG
GAAATTAATTGTTTGCTCGCTCACATGCGACGCGATCTCTTTTTAGACAAAATTATATAGAGGTTAATGATTCCCATGCAACCCAATGCAAGAGTACGCA
TGTCTATGAATTAGATGTTGATGCCACTCTTGTATTCAGTGCCGGCCGTAAAGCTTTCGGGGATGACGTCGTCGACGACACGGTAGCCGCCGTTCTTGAC
AAGGAAGCGGACGGAGAAGGGGCCCTTGAGCGTCGCCTCACTCTTGAGCAACCAGGTGTTAGTCGACGACTCCTTGAGCCCCACCCAGTACTTGCCACCC
TTCTCCTTGACCTCCACCTCAGAGATGGTGACATTGGTGATGAGCTCTAGACTAGTGTCGCTAGAGCCCTCACCGACCTTGAAGGCAAGCTCAGTGGCGC
ATGAGCCGGAAGGAGGACAACGAGGCCATTAGCAAGATAGATTGTTTGTTGGTGTTGTCTTTCTTGTTTCTTGAAGGGTAGAGGGAAGGATCGATATGTT
TGGTGATCCATGTTGCAGCTGGGTGCGTATTTATGGTGGCGGGGGCCAAAGAAA