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Detailed information on CNT30370371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693744Oryza glumipatulaOryza sativa44.8447.6393.13291forward
CNT30553632Oryza glumipatulaOryza glaberrima30.8219.0896200forward
CNT30104097Oryza glumipatulaOryza rufipogon16.1834.5490.48105reverse complement
CNT30576330Oryza glumipatulaOryza barthii30.8221.7995.5200forward
CNT30116857Oryza glumipatulaOryza nivara43.7639.5594.72284forward

Expression of CNT30370371

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MMMMGQKYHPRMRTYRMFLYSAIVMALVQESGVHLAWCQDLESSC*

>peptide 2 (48 aa)
YPFPPPTEGIVYIINSSLSMLLIYYYCNKIKIPHLDLDELRQILLLYG*

>peptide 3 (59 aa)
MNSARFCCFTGELEHRLLEQSIVPSSPPLIKRLAAKLELMHGLARGSNPTCGSNPAPVT*

Sequence

>CNT30370371
TATCCCTTCCCTCCCCCAACAGAAGGCATCGTATATATTATTAATTCCTCTCTCTCCATGCTGCTGATCTACTATTACTGCAACAAAATAAAAATTCCCC
ACCTTGACCTAGATGAACTCCGCCAGATTCTGCTGCTTTACGGGTGAGCTCGAGCACCGCTTGCTTGAGCAATCGATTGTCCCGAGCTCGCCACCACTGA
TCAAGCGCCTTGCCGCTAAGTTGGAGCTGATGCATGGTTTGGCTCGTGGATCCAATCCAACCTGTGGATCCAATCCAGCCCCTGTGACTTGATTTTGTTC
GGCCATCAGAGGGATCTGTGGACTCAGCATGATTTGGTGATGATGATGATGGGGCAGAAGTATCATCCAAGAATGCGAACGTACCGCATGTTCCTGTATT
CTGCAATTGTGATGGCATTGGTCCAGGAATCGGGAGTTCATCTGGCATGGTGCCAAGATTTGGAGAGTTCTTGTTAGTGTGGAGACGCAATCTGTGTAGA
TGAAAATAAAACAACTGTGTATTTGTACTTATGTACTCCCTCCGGGCTGATAATACTTGTCGTTTTGGACAAGGGTGAAATCAAACTTTAGAATCTTTGA
TTATAAATCATTTTTAAAATATTTATCTTTCAAATATGGTGATTACGTG