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Detailed information on CNT30370360


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001126, E-value = 2e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695991Oryza glumipatulaOryza sativa73.5835.0392.28337forward
CNT30553947Oryza glumipatulaOryza glaberrima59.6134.6482.05273forward
CNT30117438Oryza glumipatulaOryza nivara71.8337.7787.23329forward

Expression of CNT30370360

Peptides detected in this lncRNA

>peptide 1 (55 aa)
ELVADEITLFRWGCFFLPGWFLLGSTLVGCRKDLLGRRCFREPNYSANRPYLSKL*

Sequence

>CNT30370360
AGAATTGGTTGCAGATGAGATCACTCTATTTCGATGGGGTTGTTTCTTTCTTCCAGGATGGTTCTTACTAGGGTCTACCCTAGTCGGTTGCAGAAAAGAT
CTTTTGGGTAGAAGATGCTTCCGCGAACCTAACTATTCGGCCAATCGGCCATACTTATCTAAGTTGTAAATTGTATAAACCTAACTAAAACTTAGAACTT
AGAACTCCCTATGTTGAGATTTCATGTGCTTGAATGAAAGTGTTTAGTGTGTTCCTTTTGTTAGGGACATATTAAACATGAGTATGAATTAAAGATATTT
GAGATGTTTTAGATCTTTAGCTATTTTTGTCAAGTTTTCTGAATGTGAAACACATCTTGTCGCCGTTCCTGAATGTGTAACACATCTGGTCGGGTTGCCG
TTCCTGAATGTGTAACACATCTGGTCGCCGCCTTCGAGTGGTTTGACAGGTATATCTC