Detailed information on CNT30370330


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553766Oryza glumipatulaOryza glaberrima99.6775.5299.921191forward
CNT30576582Oryza glumipatulaOryza barthii92.3898.3199.821104forward
CNT30116660Oryza glumipatulaOryza nivara99.9289.5799.51194forward

Expression of CNT30370330

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 2 (33 aa)
MNDLRSFTFFTVSCATGDFVAVNSMMVADGEMR*

>peptide 3 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 4 (81 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDVKYWVLTNRSGFSFFLSV*

>peptide 5 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 6 (49 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQA

Sequence

>CNT30370330
AAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAA
TCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAAGAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGAC
TCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATG
ATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATC
AAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCATT
CCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAAT
TTCTGGGATGACCAGTTGCTGCTGCTCAGATGTAAAGTATTGGGTTTTGACCAACAGATCTGGTTTTTCATTCTTTCTTTCAGTATGAATGATCTGAGAT
CCTTCACCTTCTTCACTGTCAGTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGAT
GCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGA
AACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTCATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATAC
ATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAAC
ATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAGCCAG