Detailed information on CNT30370326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604109Oryza glumipatulaOryza punctata99.73100.6493.581106forward

Expression of CNT30370326

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 2 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 3 (49 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQA

>peptide 4 (85 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDVNCATGDFVAVNSMMVADGEMR*

>peptide 5 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

Sequence

>CNT30370326
AAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAA
TCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAAGAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGAC
TCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATG
ATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATC
AAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCATT
CCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAAT
TTCTGGGATGACCAGTTGCTGCTGCTCAGATGTAAATTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGA
AAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTG
ATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTCATTCAGGTTCAGCATTTGAGTTT
AGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGG
TGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAA
TCAAGCCAG