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Detailed information on CNT30370304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3E6T0|PT525_ARATH, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30589954Oryza glumipatulaMusa acuminata20.4352.8981.34284forward
CNT30553864Oryza glumipatulaOryza glaberrima10069.6499.571390forward
CNT30246688Oryza glumipatulaAvena sativa30.1462.2688.31419forward
CNT30363627Oryza glumipatulaSorghum bicolor8.9252.188.71124forward
CNT30596265Oryza glumipatulaOryza meridionalis6.7637.610094forward
CNT30104895Oryza glumipatulaOryza longistaminata88.4299.5998.781229forward
CNT3099790Oryza glumipatulaOryza rufipogon12.4520.4389.02173forward
CNT30551105Oryza glumipatulaOryza brachyantha27.1295.9391.51377forward
CNT3063900Oryza glumipatulaSelaginella moellendorffii7.3439.6985.29102forward

Expression of CNT30370304

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKVYSSPPESRCKCKYFPKPINSLDLPSRSN*

>peptide 2 (32 aa)
MPLEVSRIWMSTSRVASNATAASCSATPRTSKR

>peptide 3 (60 aa)
MVSAEVLPTSKNTARFSAKAQSELVPNTKKSGRNVPTARSLGSSTNTHGTSRKPRQHGAT*

Sequence

>CNT30370304
TTGACGGATGGATGCATCAAGTTGATAAACCATTCAAATTGAAAAGGTAGAAATACACAGCAGTAGATTATAATATTACAGTAAGCTCATTATATATAGA
AGATAACCACCAAAATACCAATATGTAGAAGTACATTTTTAGTACCTAGGCTACTAGTAGAACAAATAAATTTTAGGCAATGAGCGAGAGAGGCAACGAG
GCTGTCTTTCTCTGGAACAAAAATAGCTGAATAAATAACAGGGTAACATGAAAGTTTACTCTAGTCCTCCAGAAAGTAGGTGCAAGTGCAAGTATTTTCC
TAAACCAATAAATTCCCTTGATTTGCCCTCCAGATCCAACTAAAGTTAAATAAGTGAAAGAACAAACTGGTGTCCACCTCCTTGAAAGCAACCGTAGACC
AACCAAACTACAGTCTTTTGCACTTTGCACCAGATACCCTGCACAACATCCAACATAATTAGAACAAAGGGATACATACCAAGGAAGTGAACAACATTCA
AGAGTACTTTAGCAATGCCTCACGCAACATTACATAGGGCCCAAGCTTTCTTAGTTGCAACAAAGTGGATATAGTGATTATATAGACTACAAAGGCTGTT
GCAACAAAGCATTTCAGATAGTATATGTTTACACTTCTCTAGTACTCCAGTAAACATATGTAGCATCTCAGTAATAAATAAAAAAAATACAGGTGTGTAA
ACTATAAAAGATCGCACATTTTTCCATCTATTAAATGTAAAAGATCACATTTTACTCCATAATTTATTGCTCTCCTACAACGGATCAAGGTAAAGAACAA
ACACATTGAGAGTGCAACCAAAAGAGATAACACAGCCGGATTTAGAACCAACCAATTTGTGTGCCAGGATCAGATCTGGTGGTGGCTCTATGCCTGGTTA
TCGCTCTTGCGATCACTGTGCCCATCGCGCTCCTGCAACAGCGAGCCAGCCTCCTCATCAGCCTGGCTGATCTTCTTCTGCGCCTCCTTCGCCTTGAGCG
CCTGCAGCTTGACGTGGTTGTAGTATGCCACCCCCAAGAAGGCGATCAGCAGCCAGTCCTTGACCACCCCGGCGACGTTCATGGTGAGCGCGGAGGTCTT
GCCGACGAGCAAGAACACCGCCAGATTCAGCGCGAAGGCGCAGAGCGAGTTGGTCCCGAACACGAAGAAGTCCGGGCGGAACGTGCCGACGGCGCGCAGC
CTGGGCAGCTCGACGAACACCCACGGCACGAGCAGGAAGCCGAGGCAGCACGGCGCGACGTAGTACAGAGAGGTGATTGGGTTGAGCGAGATGCCCTTGG
AGGTGAGCAGGATCTGGATGAGCACGAGCCGCGTGGCCTCGAACGCCACCGCGGCGAGCTGCAGCGCGACACCCCGAACATCGAAGCGCG