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Detailed information on CNT30370255


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693422Oryza glumipatulaOryza sativa91.5282.23100583forward
CNT30673198Oryza glumipatulaSetaria viridis17.7449.5695.58113forward
CNT30532753Oryza glumipatulaEucalyptus grandis16.1741.5383.5103forward
CNT30178026Oryza glumipatulaSecale cereale20.8823.8482.71133forward
CNT30285918Oryza glumipatulaTriticum aestivum16.9522.9889.81108forward
CNT30384456Oryza glumipatulaTriticum turgidum16.9520.1989.81108forward
CNT30591852Oryza glumipatulaMusa acuminata15.0723.0291.6796forward
CNT30435366Oryza glumipatulaAegilops tauschii16.9523.7490.74108forward
CNT30240454Oryza glumipatulaAvena sativa16.9530.6894.44108forward
CNT30655703Oryza glumipatulaTriticum dicoccoides16.9530.0890.74108forward
CNT30131217Oryza glumipatulaLolium perenne16.9521.6494.44108forward
CNT30679604Oryza glumipatulaTriticum urartu16.9532.1490.74108forward
CNT30338878Oryza glumipatulaEragrostis tef21.1917.3194.07135forward
CNT30704201Oryza glumipatulaPrunus avium13.533.284.8886forward
CNT30149479Oryza glumipatulaBrachypodium distachyon19.7832.7388.1126forward
CNT30101773Oryza glumipatulaOryza rufipogon90.7470.1599.83578forward
CNT30576447Oryza glumipatulaOryza barthii47.110099.67300forward
CNT30496573Oryza glumipatulaDigitaria exilis21.352595.59136forward
CNT30116717Oryza glumipatulaOryza nivara81.4863.14100519forward
CNT30604129Oryza glumipatulaOryza punctata35.9536.5294.32229forward

Expression of CNT30370255

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RVIMHAIFSFFTLPHECRDAKSRGDRKLKPNTWDRSTSHAASNWILYNLYSHRNSTIISTS*

>peptide 2 (33 aa)
MAIRPWGTSSTVQRICMDGSDQEEGEAETRNLI*

>peptide 3 (37 aa)
MQHRIGSFTTYIAIGIVQLYQHHKQGELIHGDPAMGD*

>peptide 4 (34 aa)
MSRCKIEGRQKIKTEHMGSQYVACSIELDPLQLI*

Sequence

>CNT30370255
GCCGGGTAATCATGCACGCCATTTTCAGTTTTTTCACACTACCACATGAATGTCGAGATGCAAAATCGAGGGGAGACAGAAAATTAAAACCGAACACATG
GGATCGCAGTACGTCGCATGCAGCATCGAATTGGATCCTTTACAACTTATATAGCCATAGGAATAGTACAATTATATCAACATCATAAACAGGGGGAATT
AATCCATGGCGATCCGGCCATGGGGGACTAGCAGTACAGTACAGAGGATTTGCATGGATGGATCGGATCAAGAAGAAGGTGAGGCAGAGACGAGGAATTT
AATTTAGATCTTGCCGCGTGGGCCGGGCGTCGGCGGCAGCTGCGGGCCCTTCTTGATCGGAAGCAGGAACTTGAGCAGGAGCCCCCTCTTGGTGAAGGGC
CCCGCGAACGTCTCGAAGAACTTGCTCTGCATCGATCACCCACACGAATTATTCAGTAAATTAATCATCGAGCTAAGTATATATTTTAGTCAGGTAATAC
TAACCTGGAGAGGGTTGTACGGCGACGGCGCGTCGGAGCCGTACAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCCTCGAGGTCGAAGTAGACGCTCTT
CTCGCCGTACTTGGCCACCACGGCGGCGCGCGGCCTG