Detailed information on CNT30370252


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000734, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693444Oryza glumipatulaOryza sativa5.5487.1398.3176reverse complement
CNT30555277Oryza glumipatulaOryza glaberrima13.9189.6688.91442forward
CNT30447580Oryza glumipatulaSaccharum spontaneum2.2324.4888.7371forward
CNT30105187Oryza glumipatulaOryza longistaminata8.1232.6287.6258forward
CNT30103384Oryza glumipatulaOryza rufipogon15.5895.9390.71495forward
CNT30576560Oryza glumipatulaOryza barthii39.6664.5597.381260forward
CNT30604419Oryza glumipatulaOryza punctata5.6765.9388.33180reverse complement

Expression of CNT30370252

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MHRHSPLLDSFTLTPSPLPGLTGYLVGMSEALRLTSSSSSSPAFFVFLKQVTTRCLCPAGGFPPLRHHLLTASFASP*

>peptide 2 (94 aa)
MTAAAVVVVDVPAMRRGAAVAFPVTGCAPSRSVRVLWGGVAAATNLVPCAAPSSTPFYMAQCDGGPPAIGLGTLDQGAGQGPLEPLGSRGGRSI*

>peptide 3 (37 aa)
PSGVADAGGPRHRRAMANASFLLSSSPLPPPSLTPTV*

>peptide 4 (35 aa)
MAPFGFNDPDSTQAHIKCTRTERRGLRLGLRVCPV*

>peptide 5 (38 aa)
MSELCYEKKIIILPKINKSIFFINMLSTFLLRGILTLI*

>peptide 6 (32 aa)
RAASPTLAALATAAPWPTPLFFSLLLRSPHRL*

>peptide 7 (32 aa)
MCKIYNWSRWGHRFIAIIIEVFLKKYRYLCAI*

>peptide 8 (87 aa)
ERRRRRWRPSPPPRHGQRLFSSLFFSAPPTVSNPHRVRESGGRKTEMAAPPRAPSPGRACTGGCVHDRRVAPRRCPLPSPPFADDGR*

>peptide 9 (54 aa)
MKKRRPSSSWSRGCRGCGAGEDDGCGSGGRRRPGDEAWRGGGVSRHWLCPLSIG*

Sequence

>CNT30370252
CCGAGCGGCGTCGCCGACGCTGGCGGCCCTCGCCACCGCCGCGCCATGGCCAACGCCTCTTTTCTTCTCTCTTCTTCTCCGCTCCCCCCACCGTCTCTAA
CCCCCACCGTGTGAGAGAGAGCGGCGGCCGAAAGACGGAGATGGCGGCGCCGCCGCGGGCCCCCTCGCCGGGGCGCGCGTGCACTGGCGGGTGCGTGCAC
GACCGTCGAGTGGCTCCTCGGCGGTGCCCTTTGCCCTCCCCCCCTTTTGCCGACGACGGCCGGTGACAAGGTAGGGTTAGGGTTTCGATCTTTTGATCCG
TGTGGATCTTGTGCTTTTCTTTCTTTGGATTTCTTTCCCCGAACCGATCTAATCACTAGGGTTGCTCTGATACCATTGTTAGACTTTGCACTAGGATCAC
CCAGGTTAGATCTAGTCGGGTGGTTCTATTTGGGATTGATGTTTGAACAATAGAGATTGAAAACGGGAGATGGTTTAGATAGACCGACCGGTTGAGGTGT
TGGAGGATGAAGAAGCGCCGGCCATCGTCGTCGTGGTCGCGCGGTTGTCGTGGATGCGGCGCCGGTGAGGATGACGGCTGCGGCAGTGGTGGTCGTAGAC
GTCCCGGCGATGAGGCGTGGCGCGGCGGTGGCGTTTCCCGTCACTGGTTGTGCCCCCTCTCGATCGGTTAGGGTTTTGTGGGGTGGAGTGGCGGCGGCGA
CGAACCTCGTACCGTGTGCCGCCCCGTCCTCCACCCCCTTTTATATGGCGCAGTGTGACGGGGGCCCACCAGCCATAGGGCTGGGCACCCTCGATCAGGG
CGCGGGTCAAGGCCCCCTTGAGCCGTTGGGCTCAAGGGGAGGGAGATCCATCTAACATTAATATTAATGTGGGCAAACAGCACCATAACTTATTGATATA
GATGCATAGAGTAAATATTTTTTGCAAGCTCGATGGTATTGAGTAGAAATGGGCTTACTCAGTAGCTTATCATAGAAATGAGCAAACTCGATGGCATAGA
ATTTTTTTTTCTTTGAACAGACACTGCGATATGTTTTCTCATCCAACATTTGTTGTATTTTGTTTGTGGTAGACATTATTTCTTATTTATTTTGTAATAG
GAACTCCTTACAAGGCATAAATATAGTACAGCTAGCAGAGTTTTTCTTTGAAAGAATTATGAGGGGGCAAGTTTTTTCAACTTTGATTTGAAATGGGTTT
TATTATTTTTCTTACAGTACTAGTAGCTAAATGTCTGAGCTTTGCTATGAAAAAAAAATCATAATATTGCCTAAAATAAATAAAAGTATATTTTTCATCA
ATATGTTATCCACCTTTTTGCTACGAGGAATACTCACATTGATTTAATTTTATGAGGCTATCTATCTATTTAGATCTAGTTGTTTATGTACTATCTCTAT
TTTCTCTATTTTTTAATAGATAACGCCGTTGACTATTTATTACACGCTTGACCATTCGTCATATTTAAAAAACAATATGTAAATATGTAATTATAGTTTA
TTTTGTTTTGAGTTGTTTTATCACTCAAAGTACTTTTAAGTATGATTTATATCTTATACAATTACATAATTTTGTGAATAAAACGAATGGTCAAACATTT
GTTCAAAAGTCAACGACATCATTTATTAAAACCAGACTGAGTATATATTAAGAAGTTTAAGGGCTAATGTGTAAAATCTATAATTGGAGTAGGTGGGGTC
ACAGATTTATTGCCATTATCATTGAAGTCTTTTTAAAGAAGTATAGATATCTGTGTGCAATATGAACAGGAAATAAAGGCACTCTCTCTATTTCTAATTT
GACAGAAAACATCCAAGGAAATCTTGCAAATTTCATACTATTAGATTGCTTTAAGATTTGTGTGATACCACATAAGCCTAACTTCTCTCATCCCTCCTCA
CTCCACCATTGCCTCGACTCATGCATCGCCATTCACCACTGCTCGATTCCTTTACTCTTACACCTTCGCCACTACCCGGTCTCACCGGCTATCTAGTAGG
CATGAGCGAGGCCCTTCGATTGACCTCCTCCTCATCCTCTTCCCCTGCTTTCTTTGTCTTTCTCAAACAGGTGACGACGAGGTGCCTTTGTCCCGCCGGT
GGCTTCCCACCACTTAGACACCACCTCCTCACCGCAAGCTTTGCTTCGCCCTAGCCACCAATACCGGTCCATCTCGCTCTTCTCAATCCCTATGGCTTTG
GCATCGCCCACCTATATCCACCACTTCCTACATCCATCCCTCTAAGCCTAGCGTGGCCTCCTCTCTTCTCCCTCCCACCCCAGACCCAACCCAGGATTGA
ATTGTCGCTGATGTCCATACGCGCGTGAACACTCGACATCAGCCTTTTCGAAGACGAAAGCATCCAGGCGTGTTGTTTATGTTCTAAAAAAAAGAAAAAA
AAAGAAAGGCGTGTTGTGTATGTATCCGAAGTAGGATGGCACCTTTTGGCTTCAACGACCCTGACTCAACTCAAGCGCATATCAAATGCACAAGAACCGA
GCGCAGGGGACTCCGACTCGGACTCCGAGTCTGTCCCGTATAGCCGACCATAAATAGCCGCCGCGCTCCTCGTCTCGTCCTTCCCCCACTTCTCTCCCAT
CCTCCATCGCACTCACTCCTCACCTCGATCCATCTGCGCCAGCGCGGGCCTCTCCCTCCCATCTCCATCTCCCACGGATTCGCGAAGCGCCTCCCATTTT
CATCTCCTCCCTCGCGCCGCGGACCTCTGAAAGACCAAGAACGGCTATAGAGGGGGGGGTGAATATAGCAATTCAAATCTTGCCCCCGAAAATACTCGTC
AAGCCGGATTTCTCAAAATCCTTACTAGAACTGCGGCTATTAGAGAAGCCGGATCTAGAAAAGAGAGAAGGAATTCTCAAAACTAGAAGAGAGGTGAGGA
GGAGAGAGCAAAACTCATCATCGCAAAGTTCAAATTGCAAGCAGAATTTAAATGAACAAGACAAAAACGAAATCCTTCAAATCATTTCATTCATAGGTGA
TGCAAAATAACCGCTCAACTAGGAGCAAACATACACCTTCAAAGGAACATTAACACAAACTTAAAATCTCTCGGACAAACACACTCCAAACTAATCCTAA
TACAAAAGCCTCTCGGGCAAACACACTCCAAACTCACACCGAAACTCTCTCACCGAGCATCTCAAAAGGATTACAAA