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Detailed information on CNT30370219


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693936Oryza glumipatulaOryza sativa40.798097.19392forward
CNT30553839Oryza glumipatulaOryza glaberrima44.4377.7898.36427forward
CNT30596215Oryza glumipatulaOryza meridionalis17.2732.8798.19166forward
CNT30101862Oryza glumipatulaOryza rufipogon48.9148.6597.02470forward
CNT30116861Oryza glumipatulaOryza nivara44.4377.7898.36427forward

Expression of CNT30370219

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRRRRTSRGRQRRRSGNGGGGARSTSSEYGER*

>peptide 2 (88 aa)
MKQTIIKHNKHHQTQPQRLVLLVCNAAASMPLMPMAMVCELSMVAQNWKASAMAVATTWSQYGSCPKLNPRTGSLQEIKKIQRKQERN*

>peptide 3 (60 aa)
MSKYYNHQFITSQTSTHVLSKNYIKPDCSLPPLLARSTRGDEHISHKTRQDYNTHCLLMV*

Sequence

>CNT30370219
ACCATTCAGTGACACAAGGATAGATTCATTGGTGCAAACATTATAGCATAGGTTCAATGTCAAAATATTACAATCATCAGTTCATCACATCACAAACCAG
CACACATGTGCTCTCCAAGAATTACATCAAACCAGATTGTTCTCTTCCACCCTTATTAGCAAGGAGCACTAGAGGAGATGAACACATTTCACATAAGACT
AGACAAGATTACAACACACATTGCTTATTAATGGTCTAGATTAATGAAAACAACATGAAGCAAACCATAATTAAACATAATAAGCATCATCAGACACAAC
CACAGAGGCTAGTACTACTAGTTTGTAATGCAGCTGCTTCCATGCCATTGATGCCAATGGCCATGGTGTGCGAGCTCTCCATGGTGGCTCAGAACTGGAA
GGCGTCGGCCATGGCGGTGGCGACGACATGGTCACAGTACGGTTCTTGTCCAAAACTTAATCCAAGAACCGGATCTCTTCAAGAGATCAAAAAAATCCAA
AGAAAACAAGAAAGAAACTAGTAGGAGGATGAAAAAGAAATCAAGATCTAATCAATTAGAGGCTGGAGATGGTGTTCTTGGGAGGAGGGCGATGAGTTCA
TGAGAAGACGTAGAACCAGTAGAGGAAGGCAACGGAGAAGGAGTGGGAACGGCGGCGGCGGAGCACGTTCAACTTCATCGGAGTACGGCGAACGTTAGAG
GAAAGGATAGGTAAACATTCCCCAGATCGGATCTACGCCACCAACCTCAACCTCGAGCAAGAACAAGAACAGCAACGAGGGAGTGGAAACTAAAATTCGA
CCAACCCGAGGGGCTTCCTCGCAAGAATGCAAGGAGTAGACTCGAAAGGAAAAGAAACTAGGAGGACCTGAATGTAATAAAAAGATGGGAACCAAGGACT
TATCTGCGAAACAGAGGGGACTCCGGGGGCTCTAATGCATAGTGCAATTAGACGGATGGGG