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Detailed information on CNT30370213


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553860Oryza glumipatulaOryza glaberrima41.8349.6100187forward
CNT30101793Oryza glumipatulaOryza rufipogon94.8510099.76424forward

Expression of CNT30370213

Peptides detected in this lncRNA

>peptide 1 (34 aa)
AVSSKRNGMKAEVDYIKKPGTHEEMEQEYMMRSP*

>peptide 2 (58 aa)
MMIDDPSKLARDPSNIDRHTHTLTTTTTVLFRRQSKRQGLPTYKLGTNASKLRPRSKL*

Sequence

>CNT30370213
GGGCAGTAAGCAGTAAGAGAAATGGGATGAAAGCAGAGGTAGATTATATTAAGAAGCCTGGCACGCATGAGGAGATGGAGCAGGAGTACATGATGAGATC
ACCATGATGATAGATGATCCATCCAAGCTAGCTAGGGATCCATCCAACATTGATCGACACACGCACACACTGACAACGACGACGACGGTTTTATTTAGGC
GTCAGAGCAAAAGGCAAGGCCTGCCTACATATAAGCTGGGTACTAATGCAAGCAAATTAAGGCCTCGATCAAAGCTCTGATCGACAGTAGCAGCATCCAT
ACGATAAATCCTCATGCAGCCGGGCGACGACGACGATAGATTCAGACGAAGGACTTAACTAAGCAAGAAGGAGATAGATGTTGTTGCTGATTGAGCTCAA
GAATTGCCTCTTGCTTTGGTTGCTGATGAACTGATGATCGAGGAGGA