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Detailed information on CNT30370210


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001126, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695966Oryza glumipatulaOryza sativa42.9577.793.4697forward
CNT30596264Oryza glumipatulaOryza meridionalis47.3259.9597.79768forward
CNT30109911Oryza glumipatulaOryza longistaminata15.9641.9893.05259forward
CNT3099887Oryza glumipatulaOryza rufipogon46.3332.9588.83752forward
CNT30117497Oryza glumipatulaOryza nivara47.4474.5492.47770forward

Expression of CNT30370210

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PTFSLSPLSRFAEEPRNPASDSTGTEVPSPAPAREVLDAVAIRS*

>peptide 2 (47 aa)
TNLLSLALVSFRGRTEEPRLGFDGNGGAISGASERSPRRCRNPFVTS*

>peptide 3 (31 aa)
MIIISHHVDKVYVLCRVKTNRLAVLAVMSGV*

>peptide 4 (40 aa)
MSIDMCFILLKLNLNFKMWCDLWIISLLPWKAIRSYVICV*

>peptide 5 (64 aa)
QPSLSRPCLVSRKNRGTPPRIRRERRCHLRRQREKSSTLSQSVRNKLSHFATSFINTFRSRIPK*

Sequence

>CNT30370210
ACCAACCTTCTCTCTCTCGCCCTTGTCTCGTTTCGCGGAAGAACCGAGGAACCCCGCCTCGGATTCGACGGGAACGGAGGTGCCATCTCCGGCGCCAGCG
AGAGAAGTCCTCGACGCTGTCGCAATCCGTTCGTAACAAGCTGAGCCACTTCGCCACGAGCTTCATCAACACCTTTAGATCAAGAATCCCGAAGTAATCG
ACGCGAGGTGGACCACGGTGGGAGATCCTCTTCTTCTACCCCAATTCCGGCCGCCGACGCCATTCCTTTCTTTCTCCTTCTCTGTACAAGCCCGGGGGTA
CACCGTCGACGACGACTGTAGCAGCCGCGCCGTCGCCGAACCAGTACACCATCGCCAAGACTTCGCCGAGCCGCGTTCGCTTCTTGACGATTCGCCGTTG
AGTCTCAAGGAGATCTACTTTGTAGCTGAACAAGGAGTGGAAGAGCAAGGCAAGCCACCTCCCCTCTTCGATCACATTGAACCTATGATTTGGTGGTTTT
TGAAAAGTTTGCAAAATATGCATGTCTATTGTACACTAATCCATTAAAATCTTGTAAAATTTGTTAGATCAACTCCTTTACTTGCATTATCACCTAAACT
CCATAAAAGACCTTAACCATTATTCCAAACCTTAGGAACAATTCATTGCGTCACATTAAGAACGATGTTTGAAGTCACAAGTCTATAGAAATGCTTAGCC
ATGCTTAGTGATGAGTTTACTTACCATTTGGGCTCAATTACATATATAAAATGATTTATTTTGTGATCTGAATTAAAATGATAAAATGTGATATTTGTTA
AATAAAATGTTGGAAAATGTGGATTTTAAGTTTGGGCCTGATGTGGTACACATATGGTGTTTAGTTGTGTGTCGATAGGGGGAGAGTGTGCCTAGACCGA
CCTAATGACTTCACTCAATGTCAGTTCATTTCGTATACAGTACAACCACATGTGCTAGTATGGGATAGCCCAAGCTTAGTAAATTATTTATGGTTTAGCC
TTACATTCTGGTAGGCCGGTGTATATGAGTTCGTATAATTCAGAGGAGCTTCCTATTTACCCCGAAGTTGTAGTTTAGGTGACTAAGTGTGTCCAATACA
ACGGTATTGTGCCACGTGGTGGGTTCCCGTTGTGTCCGCCACCACGGCGTTAAGTTTAAGGCGTGGGCCTGCCACTTAACGGTTCTAGGTCATATATCGA
GTATGGCTTAGGATGGAGTAACACGTATCGTGTTGGTGTAAGTGCTGGTGTAAGGCTAAATCATGAATCTTGGAAGGGCTTTGTTGTGAGTAATAAATCG
GGTGCTTATGTATCGCGTGCCATGCTTTTTGCATGATTATTATTTCGCATCATGTGGATAAAGTGTACGTACTCTGCAGAGTTAAAACTAATCGATTAGC
CGTGCTCGCGGTCATGAGCGGCGTGTGAATATGTCATGAGTATAGACATGTGTTTTATTCTTCTAAAGCTGAATTTGAACTTCAAAATGTGGTGTGATTT
ATGGATTATATCCTTGCTGCCATGGAAGGCAATAAGGAGCTATGTTATATGTGTTTAACATCTATTTTGATGCCCATTTGCTAAGTGTATGCTTGCTGAA
ATTTAATTAAAAATAAATCTGAA