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Detailed information on CNT30370201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553647Oryza glumipatulaOryza glaberrima90.9310099.911103forward
CNT30101746Oryza glumipatulaOryza rufipogon87.399.3497.261059forward
CNT30116754Oryza glumipatulaOryza nivara90.8510099.551102forward

Expression of CNT30370201

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDLCYWRFCRSQFDDGC*

>peptide 2 (56 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQARSFLLS*

>peptide 3 (42 aa)
ASHIIHFTDLTSIYIFPKLSIQAKDEETIIPINMTYNRMHYN*

>peptide 4 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 5 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 6 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

Sequence

>CNT30370201
GCAAGTCATATCATACATTTTACAGATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACA
TGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAAGAACCTTCACCCTG
CACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGA
CTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGA
CTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGT
GGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCATTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGC
CAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACCAGTTGCTGCTGCTCAGATTTGTGCTACTGGCGATTTT
GTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGA
TCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTT
CGTTCCCTGTGAAACACATCTCATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTG
CAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATT
TACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAGCCAGAAGTTTCTTGCTTAGCTAAGCAGAGCCCCATTTCAGCTGGACACTG
ATGAATTCATGCG