« Back to Oryza glumipatula search


Detailed information on CNT30370178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693450Oryza glumipatulaOryza sativa49.79.8192.34248forward
CNT30101301Oryza glumipatulaOryza rufipogon84.7715.4399.05423forward
CNT30116578Oryza glumipatulaOryza nivara84.5722.5799.29422forward

Expression of CNT30370178

Peptides detected in this lncRNA

>peptide 1 (57 aa)
AFSSLSPRALSLFRSLSLSCSLSHSLQREGERSIVWIDFLPLDSTGELSQYLFLLCS*

>peptide 2 (61 aa)
LSPRCLRARSLSFVHSRFLVLSLILSSERERDPSFGSIFSPWIQPVNFHSTFSFCVHEMKD*

>peptide 3 (46 aa)
RFLLVVSARALSLSFTLAFLFSLSFSPARGREIHRLDRFSPPGFNR*

Sequence

>CNT30370178
CGCTTTCTCCTCGTTGTCTCCGCGCGCGCTCTCTCTCTTTCGTTCACTCTCGCTTTCTTGTTCTCTCTCTCATTCTCTCCAGCGAGAGGGAGAGAGATCC
ATCGTTTGGATCGATTTTCTCCCCCTGGATTCAACCGGTGAACTTTCACAGTACCTTTTCCTTCTGTGTTCATGAGATGAAAGATTGAGAGGGATTGCCC
AGATAGAGTACATGGATGAGATTATCAGCATATCAATTTTCTGCTTTGTGTGATTTGGGATTAGACTAAATCGTAACCAACGAACTAGGCATCGGTGGAA
ACGATGGCTGGATTTTTTTTTTTGCCTTGTCACTGAGCTCGGATTTGTGGCTGGTAGATAGGGATTTTTTTTGTGTTTGATTTGCATTTTTCGGAGTAAA
TTGGACATCCTTTTAGCAGATTTACAGGTTTGCTAGGATTTTTCCCCTCTGTTCTGTTCTGTCCTGTACAGGGGATTTTGTTATTTCCTTCTGTTCTTA