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Detailed information on CNT30370171


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS2|TBB8_ORYSJ, E-value = 4e-121

BLAST vs NONCODE:
NONPOPT002096, E-value = 9e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Oryza glumipatulaOryza sativa68.75101.7597.26583forward
CNT30567082Oryza glumipatulaActinidia chinensis38.6874.5582.62328forward
CNT3041960Oryza glumipatulaChlamydomonas reinhardtii23.8259.2489.11202forward
CNT30206408Oryza glumipatulaHelianthus annuus14.7437.9983.2125forward
CNT30721961Oryza glumipatulaTriticum spelta12.7436.4995.37108forward
CNT30368415Oryza glumipatulaSorghum bicolor43.435.7686.14368forward
CNT30569889Oryza glumipatulaVitis vinifera17.9231.9381.58152forward
CNT3022498Oryza glumipatulaPopulus trichocarpa20.431.6384.97173forward
CNT30150001Oryza glumipatulaBrachypodium distachyon8.9624.0592.1176forward

Expression of CNT30370171

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTTNEGMQQVVAHSTQAAAAAADTATAHCVFVPIEIYVA*

>peptide 2 (75 aa)
MLLSASVNSISSIPSLVYQWRKALRRNMAVNCSLTRRNISWMEVELPTKVDAMERPTGGMSQTLDLTLLGIHSTK*

>peptide 3 (69 aa)
MADAVSSGTVSALYCCDPRDVSGANPTMKKCSRGNGIRFTASFLRSEFSCPGNRRQHVTPLIVADIRWFR

Sequence

>CNT30370171
AAGTAGATAACATTTCCTAACATATACAGAGATAGAAAAGAGTAAACCACGGTTCATGTACATGAATAAACAAATTTAGACAGACAAGAAACCTGAACAA
CGATGACAACGAACGAAGGCATGCAACAGGTAGTAGCGCACAGTACACAAGCAGCAGCAGCAGCAGCAGACACGGCAACGGCACATTGTGTGTTTGTACC
GATCGAAATATATGTAGCGTAGCGTAGCAGAGAGCCAGAGAGGCAAAGCGGGAGGGATCGATCGATCGATCAGGCCTCGTCGGCGTCGTCCTCGGCGGTG
GCGTCCTGGTACTGCTGGTACTCGGCGACGAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATTCCCTCGCTGGTGTACCAGTGGA
GGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCGCTGACGCGGCGGAACATCTCCTGGATGGAGGTGGAGTTGCCGACGAAGGTGGACGCCATGGA
GAGGCCGACGGGGGGGATGTCGCAGACGCTGGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACGTTGATCATCTGC
TCGTCCACCTCCTTGGTGCTCATCCTGCCCCGGAACATGGCGGACGCCGTGAGCTCCGGCACCGTCAGCGCCCTGTACTGCTGCGACCCGCGCGACGTCA
GCGGCGCGAACCCCACCATGAAGAAGTGCAGCCGCGGGAACGGGATCAGGTTCACCGCCAGCTTCCTCAGGTCCGAGTTCAGCTGCCCCGGGAACCGCAG
GCAGCACGTCACCCCGCTCATCGTCGCCGATATCAGGTGGTTCAGGTC