Detailed information on CNT30370134


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004829, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107421Oryza glumipatulaOryza longistaminata81.9778.3496.19709forward
CNT30101583Oryza glumipatulaOryza rufipogon66.592398.61576forward
CNT30576147Oryza glumipatulaOryza barthii24.3999.5397.63211forward

Expression of CNT30370134

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MHNHLLDAFKLASSLQDCLCTIKGTSLTRSSLAGILNRLKILNMSNSNNSPTYVWSNLVN

>peptide 2 (51 aa)
MMRHESGLTLMACTISYIKLPHPTRKLCQQNNSYGPAWFMLRWKRRVKRYS*

>peptide 3 (37 aa)
MLSNWRLPFRIAFAQLRARRSHVALLLASSIDSKSST*

>peptide 4 (34 aa)
MVSLISPDRTIVHAQSLARCFQTGVFPSGLPLHN*

>peptide 5 (31 aa)
RGDRSIIVADELTSILPSVSDFPWLLTDDET*

Sequence

>CNT30370134
CGCGAGGCGATCGGTCGATTATTGTGGCTGATGAGTTGACATCCATTCTTCCATCGGTTTCTGACTTCCCGTGGCTGTTGACTGATGATGAGACATGAGA
GTGGCTTGACTTTGATGGCCTGTACAATTTCATATATCAAGCTTCCCCATCCAACTCGCAAATTGTGCCAACAAAACAACTCCTACGGTCCTGCCTGGTT
TATGTTAAGATGGAAAAGAAGAGTGAAAAGGTACAGCTGAAATTACTGAACCTCCAATCATAACTTGTACAAGCTGTAAGTAATCAGTTCTAAGTGATGA
AAAGGAACAAAAGGGGGACTACATCTCTTTGAAATAAAACAACAACAATCTATTTGCCGAAAACTATCAACTTTATTTGTAATAACACACTCGTCCATAT
CCATGGACAAACGTTTGTGCTGAACTTCCATTATTCAGCTCATAAACTAAGAAGCCCGGAAGCTGGTGGAAGGCTTAGCCAAGTGGTGAAAAAAAAACAT
CGATCTTGCAGAGTGCACACACTTTTCATGATCCAAAGTACTAAAAGCACAAATAACTGGCCAATTCTGCTTTGTAATAGGCAGAGATAATCGCTTATGG
TAAACAGATGAAAACTTTTGTCTCCTCAATCAGAAAGGTTGTGTAGATGGTTAGCCTTATCAGTCCCGATCGAACGATTGTACATGCACAATCACTTGCT
CGATGCTTTCAAACTGGCGTCTTCCCTTCAGGATTGCCTTTGCACAATTAAGGGCACGTCGCTCACACGTAGCTCTCTTGCTGGCATCCTCAATCGACTC
AAAATCCTCAACATGAGCAATTCCAACAATTCTCCTACATATGTATGGTCCAATTTAGTAAACAG