Detailed information on CNT3037013


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 5e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290333Cucumis meloTriticum aestivum17.8136.9496.43140reverse complement
CNT30511593Cucumis meloSolanum lycopersicum51.5362.2191.36405reverse complement
CNT30208971Cucumis meloHelianthus annuus41.7380.3997.56328reverse complement
CNT30720843Cucumis meloTriticum spelta25.4593.0285.5200reverse complement
CNT30497700Cucumis meloDigitaria exilis30.7944.2493.39242forward
CNT30115272Cucumis meloEutrema salsugineum37.0259.8892.78291reverse complement

Expression of CNT3037013

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MDWCGSSTPRTPEYRTMNEERHERKAYWLVIVRPQFLTGGDTKGLCPSIPWIDREGGQSFFWFFHVVKELNNGFFVLSKS*

>peptide 2 (90 aa)
MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALIL

Sequence

>CNT3037013
TTTGCCATTTCGGGTTAAGAAGATGTGAAAGCGCCTCTCTCTCTATAAGAACGGTGCGTTCCAAGGTGTGAAGTGAGATAGAAAAGTGGGAGAGAAGGGG
TTTTGAATAAGACGACCTTTTCATTTTTTTTTTTTCCATATTGATATTGAAAAGTAATAAGAATTAGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAG
CTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACAC
CAGAATATCGAACCATGAACGAAGAAAGGCATGAGAGAAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTGACTGGAGGGGACACCAAAGGCCT
CTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGGTTTTTTCGTGTTGTCA
AAGAGTTGAACAATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGC
TGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCAT
CCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGG