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Detailed information on CNT30370118


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 1e-105

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Oryza glumipatulaNymphaea colorata50.3241.0882.96311forward
CNT30512774Oryza glumipatulaJuglans regia46.1222.8483.86285forward
CNT30728649Oryza glumipatulaCorchorus capsularis24.1113.6885.23149forward
CNT30379936Oryza glumipatulaManihot esculenta33.8262.5788.04209forward
CNT30405829Oryza glumipatulaBeta vulgaris25.0818.7787.1155forward
CNT30224110Oryza glumipatulaHordeum vulgare47.910092.57296forward
CNT30143750Oryza glumipatulaMedicago truncatula43.234.8685.02267forward
CNT3059659Oryza glumipatulaArabidopsis lyrata26.3837.5684.05163forward
CNT30445994Oryza glumipatulaSaccharum spontaneum30.9113.4190.05191forward
CNT30210789Oryza glumipatulaHelianthus annuus13.9223.7684.8886forward
CNT30596122Oryza glumipatulaOryza meridionalis38.3534.2599.58237forward
CNT30359537Oryza glumipatulaLactuca sativa20.2318.9785.6125forward
CNT30705326Oryza glumipatulaPrunus avium51.4624.7584.28318forward
CNT3024028Oryza glumipatulaPopulus trichocarpa34.7929.0986.51215forward
CNT30575986Oryza glumipatulaOryza barthii99.8452.2499.68617forward
CNT30604019Oryza glumipatulaOryza punctata39.1671.699.59242forward

Expression of CNT30370118

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSTTMLGPVVSGPKHQIFLASFHVKTVVLVRGFAHNCTAGLLKNSLTEGDNRRGNNNLSTTHEVFL*

>peptide 2 (39 aa)
PRCRNDLATAPVNSISVENHITYLEADAAHVLLSQCTFF*

>peptide 3 (36 aa)
MICSPDSSMVQRTIGSDFARRFKPSTSLGRSDATLH*

>peptide 4 (30 aa)
MPRMFSSANAPSFDAHWNPATTESLISLRY*

Sequence

>CNT30370118
CCTCGCTGTCGGAATGACCTGGCCACCGCCCCTGTGAATAGCATCAGCGTGGAGAACCACATCACATACCTCGAAGCAGATGCCGCGCATGTTCTCCTCA
GCCAATGCACCTTCTTTTGATGCCCACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTAAGATACTGAACTCCCTTACACATGTCGACCACCATGT
TGGGGCCAGTGGTCTCAGGTCCAAAGCACCAAATCTTCTTGGCGAGCTTCCATGTAAAGACGGTTGTGCTTGTTCGGGGATTTGCTCATAACTGTACGGC
AGGACTTCTCAAGAACAGTCTCACGGAAGGAGACAACAGGAGGGGAAACAATAATCTCAGCACCACCCATGAAGTCTTCCTGTAGATCCTTCAAGCAGAT
TTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCACCGGACTCCTCAATGGTACAGAGGACCATAGGATCAGACTTTGCCAGACGCTTTAAACCT
TCAACAAGCTTGGGAAGATCAGATGCAACCTTGCACTGAACAGCAACACGCACAACTGGGGACACTGAGAACTTCATTGCTCTGATTGGGCAGGCATCAG
CTTCCTTCTCATTTGTTA