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Detailed information on CNT30370114


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS2|TBB8_ORYSJ, E-value = 9e-105

BLAST vs NONCODE:
NONBNAT007651, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674634Oryza glumipatulaSetaria viridis39.3244.4189.13322forward
CNT30522155Oryza glumipatulaSetaria italica35.5333.1192.1291forward
CNT30641074Oryza glumipatulaNymphaea colorata41.0391.5592.86336forward
CNT30377201Oryza glumipatulaArabidopsis thaliana47.568.0181.75389forward
CNT30629386Oryza glumipatulaVigna unguiculata18.1957.7588.59149forward
CNT30553024Oryza glumipatulaOryza glaberrima35.5320.38100291forward
CNT3015387Oryza glumipatulaZea mays40.1720.3386.02329forward
CNT30341625Oryza glumipatulaEragrostis tef55.9246.9785.15458forward
CNT30361420Oryza glumipatulaSorghum bicolor26.6251.2994.95218forward
CNT30595966Oryza glumipatulaOryza meridionalis34.3145.8498.58281forward
CNT30330123Oryza glumipatulaDioscorea rotundata41.7633.683.63342forward
CNT30575530Oryza glumipatulaOryza barthii57.8852.49100474forward

Expression of CNT30370114

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTTNEGMQQVVAHSTQAAAAAADTATAHCVFVPIEIYVA*

>peptide 2 (75 aa)
MLLSASVNSISSIPSLVYQWRKALRRNMAVNCSLTRRNISWMEVELPTKVDAMERPTGGMSQTLDLTLLGIHSTK*

>peptide 3 (39 aa)
MFLASHICCVSSGTVSALYCCDPRDVSGANPTMKKCSRGN

Sequence

>CNT30370114
GCACAGATGAAGATGAACACAGTAGAATTTAGTCCCATGAAAATGAAGTAGATAACATTTCCTAACATATACAGAGATAGAAAAGAGTAAACCACGGTTC
ATGTACATGAATAAACAAATTTAGACAGACAAGAAACCTGAACAACGATGACAACGAACGAAGGCATGCAACAGGTAGTAGCGCACAGTACACAAGCAGC
AGCAGCAGCAGCAGACACGGCAACGGCACATTGTGTGTTTGTACCGATCGAAATATATGTAGCGTAGCGTAGCAGAGAGCCAGAGAGGCAAAGCGGGAGG
GATCGATCGATCGATCAGGCCTCGTCGGCGGCGGCGGCGGCGGCGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATTCCCTCGCTGG
TGTACCAGTGGAGGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCGCTGACGCGGCGGAACATCTCCTGGATGGAGGTGGAGTTGCCGACGAAGGT
GGACGCCATGGAGAGGCCGACGGGGGGGATGTCGCAGACGCTGGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACG
TTGATCATCTGCTCGTCCACCTCCTTGGTGCTCATCCTGCCCCGGAACATGGCGGACGCCGTGAGGTAGCGGCCGTGGCGCGGGTCGGCGGCGCACATCA
TGTTCTTGGCGTCCCACATCTGCTGCGTCAGCTCCGGCACCGTCAGCGCCCTGTACTGCTGCGACCCGCGCGACGTCAGCGGCGCGAACCCCACCATGAA
GAAGTGCAGCCGCGGGAAC