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Detailed information on CNT30370079


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676293Oryza glumipatulaSetaria viridis18.2229.391.74121forward
CNT30106366Oryza glumipatulaOryza longistaminata46.3999.3599.35308forward

Expression of CNT30370079

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHNLAYARRRPQIKQNHIESNQIRTSCHQMHACMNMPMHDK*

>peptide 2 (86 aa)
MTSDNTLLARRNQINPCCVETCMDRSRGYFIKPLEALEAGGHALAAVVEDEAEVDGEVEVDGEEQRDRGLACHCCRWITRTKLTSD*

>peptide 3 (33 aa)
MRLRSTGRLRLTARNSAIEALPAIAAAGSRALS*

>peptide 4 (36 aa)
FLDDDMKVMSKHASTSVTNNRAERLYFYVLNTIQVI*

Sequence

>CNT30370079
CTTTTTAGATGATGACATGAAAGTGATGAGTAAACATGCAAGCACTTCAGTTACAAATAACAGAGCAGAGAGACTTTATTTTTACGTACTGAATACAATA
CAAGTGATATGAATCAAACAATAATTTCCAAAAAATAAAACAAACATGTACCCCGATGCATAATCTCGCGTACGCGCGGAGAAGGCCACAAATTAAACAA
AATCATATCGAATCAAACCAGATACGTACTTCTTGCCACCAAATGCACGCATGCATGAACATGCCCATGCATGACAAGTGACAACACGCTGCTAGCACGT
AGGAACCAAATAAACCCCTGTTGCGTTGAGACGTGCATGGATCGATCGCGCGGCTACTTTATAAAGCCTTTAGAAGCACTTGAAGCCGGTGGGCACGCGC
TTGCCGCAGTAGTTGAGGATGAGGCTGAGGTCGACGGGGAGGTTGAGGTTGACGGCGAGGAACAGCGCGATCGAGGCCTTGCCTGCCATTGCTGCCGCTG
GATCACGCGCACTAAGCTGACGAGCGATTAGCTCTCTGGAGTTTCAGGAGCTCCTGATTACTAGCTCGATTGCTGTGTGGTTGTGATGGTTTGATGGCAT
TTGTGGCTTGAGTATTTATAGGAGAAATTTTGGTGCAATGCTGGATGATTAGTGGGTGCAGCTG