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Detailed information on CNT30370065


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JBZ8|HCT1_ORYSJ, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692993Oryza glumipatulaOryza sativa99.4110099.53843forward
CNT30676466Oryza glumipatulaSetaria viridis21.2335.582.78180forward
CNT30553387Oryza glumipatulaOryza glaberrima49.5346.9899.76420forward
CNT30465762Oryza glumipatulaSaccharum spontaneum39.6252.583.04336forward
CNT30595784Oryza glumipatulaOryza meridionalis26.8910098.25228forward
CNT30101295Oryza glumipatulaOryza rufipogon46.9364.82100398forward
CNT30576181Oryza glumipatulaOryza barthii89.1510099.6756forward
CNT30115964Oryza glumipatulaOryza nivara23.8221.4478.71202forward

Expression of CNT30370065

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LIIGCSHRHTAVVMAKYPCKLRYKRMWPDNLLNRSKSIAPMTHLKVFYLRTLALQLLPDIT*

>peptide 2 (58 aa)
AHYWLLTSSHGCGDGQISLQAKVQENVARQFAQQEQEHSPHDSLEGILPENSSSTTSP*

>peptide 3 (55 aa)
MSTAVGGGVVLLAVTDWGTEDSMTGAGWYSTCGYDGVGGSRARRRVRSMKGMMAI*

>peptide 4 (32 aa)
MTAAPSATCKRHASPDMCSKNCICAETWCTFS*

>peptide 5 (29 aa)
MRWLWIGYHPCSRLGGQTPALHRRCHQDP*

Sequence

>CNT30370065
GCTCATTATTGGTTGCTCACATCGTCACACGGCTGTGGTGATGGCCAAATATCCTTGCAAGCTAAGGTACAAGAGAATGTGGCCAGACAATTTGCTCAAC
AGGAGCAAGAGCATAGCCCCCATGACTCACTTGAAGGTATTTTACCTGAGAACTCTAGCTCTACAACTTCTCCCTGACATAACATAAGTAGTCTGCTTAC
ACCTCGAAGATCAGCTTCCTGAACTTCTCCATGTGCTCAGCCTGCAATGAGATGGCTATGGATAGGCTACCATCCTTGTTCGCGCTTGGGAGGACAAACG
CCAGCCCTTCATAGGCGATGCCACCAGGACCCATGAACACTGGTCTTCCCCATCCAAAATCGGCATCATGAATTGGCAAGCGCACCCAGCTGGTGAGCCC
GAGGTTCGGACACCGGAAAGTGTGTGCTCCACGGACCAATGCTGATAAATCAGGCTGCAGCTCCAGGTAGTCCAATGCTGAGCGGCAGTAGCTATCGTTC
ATCCTATCTAGCGCCTCTTGGATGACTGCTGCTCCATCTGCCACGTGCAAGAGACACGCATCGCCAGACATGTGCAGCAAGAACTGCATATGTGCTGAAA
CGTGGTGCACCTTCTCCTGATGGGAGCTGCGAACGCAGTCGACCAAGGTCTGAGCGGGTAAGCTTGAAAATGTCCACAGCAGTTGGAGGTGGTGTTGTCT
TATTAGCAGTAACAGACTGGGGTACGGAGGACAGCATGACTGGGGCAGGCTGGTACTCAACATGTGGGTATGATGGAGTTGGTGGATCTCGGGCTCGTAG
GAGAGTGCGGTCAATGAAGGGCATGATGGCAATTTGAGTTCCTCGGCA