Detailed information on CNT30370058


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004778, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692932Oryza glumipatulaOryza sativa10070.0299.49591forward
CNT30553335Oryza glumipatulaOryza glaberrima10086.03100591forward
CNT30596075Oryza glumipatulaOryza meridionalis42.346.8295.6250forward
CNT30109643Oryza glumipatulaOryza longistaminata102.7192.9695.22607forward
CNT30101323Oryza glumipatulaOryza rufipogon98.6593.4399.31583forward
CNT30576161Oryza glumipatulaOryza barthii10085.78100591forward

Expression of CNT30370058

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MWQAASVYLSFVCSCCLIVLYLICTVVPSSLRSCRH*

>peptide 2 (66 aa)
GRPERERFRPATSWSPLFYPSLRRPEIYACLLVSCEFMRKHGYLALLLHALVLISRCMHGILVNPD*

>peptide 3 (34 aa)
MHACVNDVYRFQEMKCSLLLGQVASSVGWSHAHC*

>peptide 4 (35 aa)
WATREGEVPACYLLVSSLLSKFEKARDICMLACIM*

>peptide 5 (34 aa)
MGHVASSFCLFIFRLFMLFDCSLLNLYGCTQLLT*

Sequence

>CNT30370058
TGGGCGACCAGAGAGGGAGAGGTTCCGGCCTGCTACCTCCTGGTCTCCTCTCTTCTATCCAAGTTTGAGAAGGCCAGAGATATATGCATGCTTGCTTGTA
TCATGTGAGTTCATGCGCAAGCATGGATATCTAGCTCTATTACTGCATGCATTGGTGTTAATTAGTAGGTGCATGCATGGCATCCTCGTCAATCCTGATT
GATGTTTTGAACAACTGGTTATGTCTTTCACTTCATGCACGCGTGCGTAAATGATGTATATAGGTTTCAGGAGATGAAGTGCTCACTACTGCTCGGGCAG
GTAGCTAGCAGTGTCGGCTGGAGCCATGCACATTGCTGATAGAGGCCGGCGAGCGGCATTGTTGCCGGCTGGAGAGAGGCTGGCCTTCACGCGGTGAACC
AAGCTAGGATAGAAGAACAAAAAATGGGTCATGTGGCAAGCAGCTTCTGTTTATTTATCTTTCGTTTGTTCATGCTGTTTGATTGTTCTCTACTTAATTT
GTACGGTTGTACCCAGCTCCTTACGTAGTTGCAGGCATTAACTACGTACTCTGCGGTGTTGAAATCTATGGAACTTCGTTTACGAGCCGAG