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Detailed information on CNT30370054


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 7e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza glumipatulaOryza sativa72.6659.6599.21380forward
CNT30520501Oryza glumipatulaSetaria italica23.525.1294.31123forward
CNT30640424Oryza glumipatulaNymphaea colorata23.1414.5681.82121forward
CNT30190473Oryza glumipatulaSecale cereale22.5615.6393.22118forward
CNT30289517Oryza glumipatulaTriticum aestivum52.249.3789.38273forward
CNT30225926Oryza glumipatulaHordeum vulgare22.5617.3890.68118forward
CNT30387764Oryza glumipatulaTriticum turgidum52.230.7889.38273forward
CNT30569510Oryza glumipatulaActinidia chinensis12.6231.7392.4266forward
CNT30592144Oryza glumipatulaMusa acuminata11.8526.9695.1662forward
CNT30553402Oryza glumipatulaOryza glaberrima72.6672.6699.21380forward
CNT30436608Oryza glumipatulaAegilops tauschii62.3345.3488.96326forward
CNT30657898Oryza glumipatulaTriticum dicoccoides52.237.3588.64273forward
CNT30139319Oryza glumipatulaLolium perenne22.5610.0995.76118forward
CNT30228928Oryza glumipatulaAnanas comosus20.0826.9292.38105forward
CNT30596194Oryza glumipatulaOryza meridionalis72.0886.6798.41377forward
CNT30109688Oryza glumipatulaOryza longistaminata70.5569.6299.19369forward
CNT30331328Oryza glumipatulaDioscorea rotundata52.253.2281.32273forward
CNT30101372Oryza glumipatulaOryza rufipogon72.6650.499.21380forward
CNT30576241Oryza glumipatulaOryza barthii72.6657.3299.21380forward
CNT30116534Oryza glumipatulaOryza nivara72.6687.9699.21380forward
CNT30113851Oryza glumipatulaFicus carica11.8522.3896.7762forward

Expression of CNT30370054

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PGRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 2 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 3 (58 aa)
RDVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

Sequence

>CNT30370054
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGC
CGAGGGTGCCGACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAA
CTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGC
TCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTACCTC
TCTCTTCTCTGATGGATGTAGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAACCGGCCCAGGTA
CAAGAGAAGAGAAGGAAAGGTGT