Detailed information on CNT30370052


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693147Oryza glumipatulaOryza sativa18.8243.3282.4483reverse complement
CNT30596270Oryza glumipatulaOryza meridionalis14.4967.1585.22372reverse complement
CNT30108034Oryza glumipatulaOryza longistaminata4.1727.1692.52107forward
CNT30101431Oryza glumipatulaOryza rufipogon8.8843.0285.53228reverse complement
CNT30576116Oryza glumipatulaOryza barthii57.6558.8794.861480reverse complement
CNT30116465Oryza glumipatulaOryza nivara55.2461.2396.191418forward
CNT30604371Oryza glumipatulaOryza punctata8.8430.1584.14227reverse complement

Expression of CNT30370052

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MATVACVLLLFTVVVAVFPASVQTTGTVGG*

>peptide 2 (29 aa)
MQLEIELRYQVGKYINQTRAIQEIGAMQP*

>peptide 3 (55 aa)
MISKNLRKEGGDAPRVVVLIERYFIMTPGVHIYTHGEILVLLGQERNFPKDKRKT*

>peptide 4 (54 aa)
MERTRSGWRMGGGVEKTEAEAEERAGGDSLGRWKRDWDGRVVLGGLGGWWRLGG*

>peptide 5 (33 aa)
MKPLLPLAKSNLYVYAILIRRCNVQITYRLALR*

>peptide 6 (32 aa)
MQHEIVYDNLILDEPIDLSNVIGITNLFRTTL*

>peptide 7 (59 aa)
MVVSFVFGGSFGCTRGFAFGDTSGLDAATEANDDGVELDGEDTLRMEDGRRSREDGSRG*

>peptide 8 (65 aa)
DFLKIYISKRTPAVNFILTKPYNNNRIKITSPGATHGCNIYMYSYFYNHHNPFCPSWCAFSVSRA*

Sequence

>CNT30370052
ATGATTTTCTAAAAATATATATATCCAAGCGAACTCCCGCAGTAAATTTCATCTTAACTAAACCATATAACAATAATAGGATCAAAATAACTTCACCCGG
TGCAACGCACGGGTGTAATATATATATGTATTCATATTTTTACAATCATCACAATCCGTTTTGTCCATCGTGGTGCGCCTTCTCGGTCTCGCGTGCATAA
CCCGCTGTTGACGCCAAAAATACACACTGGCCTGGGAGATCTGCTTAGCTCCAGTGCAGGTCCAAGACTTGATGAGATACGGGCGTGCCAGTCAGTTTGA
TCCTGCAACTGAAAAGATATGTAAATAGTAGATCAAATAACTGACAAGCCGATGGAGCAATCCTAGCCGATGTCGATACCAGCCGATAGCGATAGGGTTT
TGAGCAATCGACTATATGTCCAATGTAGATAATGATATAAAGACGATCGGCTGATGATGATAAATAACAACAATATAATCCAATGGAAAACAATCGGCTA
ACAATGATATGATAGAACAAATATTGATCCGAAGGTTAAAGCATACATCGGCTGGAGGTATGATGTTATAAAATCTATAAGATTAGATAGATCGATGAAA
CCTTTGTTGCCATTGGCTAAATCCAATTTATATGTATATGCAATCCTTATAAGACGATGCAACGTCCAGATAACTTATCGGTTAGCACTCCGATAAAACA
TTAGCATGAACCTATCGGCTTAACAAGATTTATATTATCAACAACAATCTAGTAGGTCGAACCTAACCGATGCAGCACGAGATTGTATATGATAATCTAA
TACTCGATGAGCCGATAGATCTGTCTAATGTGATAGGTATAACAAATCTATTCAGAACAACATTGTGATTGTAGAGATATATCGGCTAAGATAGAAGATC
AGACCTAACCGAGACAGTTCCAACTAAACCGATGCGTCTCTAAACACAATGCAATTAGAGATAGAATTGAGATATCAGGTAGGCAAATATATCAACCAAA
CCAGAGCGATCCAAGAGATCGGAGCGATGCAGCCTTGAACGACGCCGATGTAGACGATAGATTCACCAACCCCGGCGGAACGTAGGACTTACCCCTTCGC
CGGAGATCAAACTAAACCGATGCAACCCCACGTCAGGTGCCAAATTCCACCGGATGATAAGTAAGAACCTCAGAAAAGAGGGTGGCGATGCGCCTAGAGT
AGTTGTATTGATCGAGAGATATTTTATAATGACCCCGGGTGTACATATTTATACTCATGGAGAGATACTAGTCCTTTTAGGACAAGAAAGAAACTTTCCT
AAGGATAAAAGGAAAACATAAAGTGCTTCTCGGATACTAAACACACCTTCCTAAAGATAAAAGAAAACAGACAAACTATTCCTAATTAATAGAAACACTT
ATCATGCTGCATCCTCTTTGAACTCGGACTCTTCTAGATAAATTTCCTTTAATTGATCCAACTCCACCAAGAACACAACTGCTGGCGATTTGATAACTCC
CATCGGTCGATTCCAAGACTCTGAAGCCGATACTGACTCTAGGCCGATGATGACTTTGGGCTTACCAAATTTTGGCGTTAACACCCGCAGCCGATGATGA
CTTTGGGCTTACCAAATTTTGGCGTTAACACCCGCAGCTAGCAATGGTTCCAGATTCCAAATTTCCAAACTCGCAAAGATAAAATAGATTCCAAATTTCC
AAACTCGCAAAGATAAAATAGATTCCAAATTTCCAAACTCGCAAAGATAAAGTAGATAGAATTACACTCTAATCTATCCTAATAAAATCAAACAGAGCGA
TGCACGGAAGAACTCCGGAATCGAACTCTAATCCACCAAAATAAAATCACCAGAGGGATCAACGGGGAACTCCAATCCATCCAAGATTGATTTACCTAGG
CTTGCTACTGGGGGACCTCAATATTGGGTTGTCTCTGGCCTTTATCTTGCTTGCTGCCGTTCACCCATCGCCAACTTCCGCCTTGCTGGCCACCCCGTGC
TAGATCCATAGTCGCCATGGCCACCGTCGCCTGTGTTCTCCTCCTCTTCACCGTCGTCGTTGCGGTGTTCCCGGCATCGGTGCAGACAACAGGCACCGTG
GGCGGCTAGCGCGAGGCGGGCAGAAGGTGAGGCAGTAGGCGCAAGCGACGAGGCACATGTTGGGGCAGTTGGAAGGGCAGGAGACGACGCAGGGGCGGCA
GCCGGTGTTGGTGCAGGTGACCTGGTAGTCACGCTTGTGGTGGGGGCTAAAGGTGATGGTGGTCAGCTTCGTCTTCGGCGGGAGCTTCGGCTGCACGCGG
GGCTTCGCATTCGGCGACACCAGCGGGCTCGACGCCGCCACGGAGGCCAACGACGACGGCGTAGAGCTTGATGGAGAGGACACGCTCAGGATGGAGGATG
GGAGGAGGAGTAGAGAAGACGGAAGCAGAGGCTGAGGAACGAGCCGGTGGCGACTCGCTTGGTCGGTGGAAGCGAGATTGGGATGGACGGGTGGTGCTCG
GTGGCCTGGGTGGTTGGTGGCGGCTGGGAGGATAAGTCGAAGGGTTGGAGGGGATTAGGGATAAGGT